Monocots PLAZA 4.5 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
AT4G39690	Arabidopsis thaliana	HOM04x5M005349	ORTHO04x5M005119	0.0e+00	1101.3	651	100.0
Potri.007G087100	Populus trichocarpa	HOM04x5M005349	ORTHO04x5M005119	4.4e-120	434.9	673	44.3
Potri.005G080200	Populus trichocarpa	HOM04x5M005349	ORTHO04x5M005119	4.1e-118	428.3	434	57.6
Solyc04g054470.2	Solanum lycopersicum	HOM04x5M005349	ORTHO04x5M005119	1.1e-115	420.2	665	45.3
GSVIVG01022188001	Vitis vinifera	HOM04x5M005349	ORTHO04x5M005119	1.3e-108	396.7	698	45.0
evm.TU.AsparagusV1_08.2216.V1.1	Asparagus officinalis	HOM04x5M005349	ORTHO04x5M005119	3.6e-106	388.7	665	42.0
ASH_gene9245	Apostasia shenzhenica	HOM04x5M005349	ORTHO04x5M005119	6.4e-95	351.3	663	39.5
ATR0661G561	Amborella trichopoda	HOM04x5M005349	ORTHO04x5M005119	1.7e-92	343.2	593	45.2
OB04G33540	Oryza brachyantha	HOM04x5M005349	ORTHO04x5M005119	1.1e-91	340.5	403	55.1
Zosma91g00780	Zostera marina	HOM04x5M005349	ORTHO04x5M005119	1.1e-91	340.5	423	50.4
Ma05_g19530	Musa acuminata	HOM04x5M005349	ORTHO04x5M005119	6.2e-90	334.7	675	39.1
OsR498G0409345600.01	Oryza sativa ssp. indica	HOM04x5M005349	ORTHO04x5M005119	8.1e-90	334.3	667	36.7
Bradi5g23320	Brachypodium distachyon	HOM04x5M005349	ORTHO04x5M005119	4.0e-89	332.0	374	57.5
HORVU2Hr1G116190	Hordeum vulgare	HOM04x5M005349	ORTHO04x5M005119	1.9e-86	323.2	659	39.0
Misin12G242100	Miscanthus sinensis	HOM04x5M005349	ORTHO04x5M005119	9.2e-86	320.9	455	49.7
LP031836	Lolium perenne	HOM04x5M005349	ORTHO04x5M005119	2.1e-85	319.7	662	40.5
TRITD2Bv1G244750	Triticum turgidum	HOM04x5M005349	ORTHO04x5M005119	7.8e-85	317.8	656	37.8
TraesCS2D02G529400	Triticum aestivum	HOM04x5M005349	ORTHO04x5M005119	3.9e-84	315.5	656	40.5
TraesCS2A02G526700	Triticum aestivum	HOM04x5M005349	ORTHO04x5M005119	8.6e-84	314.3	659	39.3
LOC_Os04g54410	Oryza sativa ssp. japonica	HOM04x5M005349	ORTHO04x5M005119	4.3e-83	312.0	681	34.9
Misin11G228300	Miscanthus sinensis	HOM04x5M005349	ORTHO04x5M005119	2.8e-82	309.3	454	48.5
TraesCS2B02G557000	Triticum aestivum	HOM04x5M005349	ORTHO04x5M005119	3.1e-81	305.8	656	40.1
PH01000055G1160	Phyllostachys edulis	HOM04x5M005349	ORTHO04x5M005119	9.9e-80	300.8	580	43.3
TRITD2Av1G279530	Triticum turgidum	HOM04x5M005349	ORTHO04x5M005119	9.9e-80	300.8	662	38.7
Sobic.006G232800	Sorghum bicolor	HOM04x5M005349	ORTHO04x5M005119	1.7e-79	300.1	540	43.0
Seita.7G255400	Setaria italica	HOM04x5M005349	ORTHO04x5M005119	1.1e-78	297.4	520	44.4
PAB00039776	Picea abies	HOM04x5M005349	ORTHO04x5M005119	6.0e-69	265.0	269	53.5
p5.00_sc00291_p0013	Elaeis guineensis	HOM04x5M005349	ORTHO04x5M005119	1.9e-62	243.4	662	32.9
Oropetium_20150105_01818	Oropetium thomaeum	HOM04x5M005349	ORTHO04x5M005119	1.7e-47	193.7	573	30.5
Mapoly0001s0396	Marchantia polymorpha	HOM04x5M005349	ORTHO04x5M005119	8.4e-47	191.4	593	31.9
Pp3c3_27510	Physcomitrium patens	HOM04x5M005349	ORTHO04x5M005119	1.3e-44	184.1	546	32.6
Zjn_sc00004.1.g11160.1.sm.mkhc	Zoysia japonica ssp. nagirizaki	HOM04x5M005349	ORTHO04x5M005119	8.7e-44	181.4	378	34.4
gene17765	Selaginella moellendorffii	HOM04x5M005349	ORTHO04x5M005119	3.3e-43	179.5	481	29.7
Spipo4G0013500	Spirodela polyrhiza	HOM04x5M005349	ORTHO04x5M005119	1.3e-42	177.6	255	53.3
Zm00001d026396	Zea mays B73	HOM04x5M005349	ORTHO04x5M005119	1.6e-42	177.2	454	37.2
gene29688	Selaginella moellendorffii	HOM04x5M005349	ORTHO04x5M005119	2.8e-42	176.4	476	29.4
Pgl_GLEAN_10010380	Cenchrus americanus	HOM04x5M005349	ORTHO04x5M005119	2.9e-39	166.4	520	34.6
Zm00008a038680	Zea mays PH207	HOM04x5M005349	ORTHO04x5M005119	4.3e-35	152.5	472	34.1
CALSI_Maker00022502	Calamus simplicifolius	HOM04x5M005349	ORTHO04x5M005119	5.7e-35	152.1	691	28.2
Zm00007a00041844	Zea mays B104	HOM04x5M005349	ORTHO04x5M005119	1.4e-33	147.5	448	34.8
Sspon.05G0037030-1D	Saccharum spontaneum	HOM04x5M005349	ORTHO04x5M005119	2.6e-32	143.3	386	31.9
gene37370	Selaginella moellendorffii	HOM04x5M005349	ORTHO04x5M005119	2.3e-28	130.2	209	36.4
Zjn_sc00023.1.g04150.1.am.mkhc	Zoysia japonica ssp. nagirizaki	HOM04x5M005349	ORTHO04x5M005119	1.1e-27	127.9	494	32.4
gene22734	Selaginella moellendorffii	HOM04x5M005349	ORTHO04x5M005119	2.5e-27	126.7	209	35.9
PH01000679G0100	Phyllostachys edulis	HOM04x5M005349	ORTHO04x5M005119	7.4e-27	125.2	112	57.1
Zm00008a006190	Zea mays PH207	HOM04x5M005349	ORTHO04x5M005119	1.7e-26	124.0	416	31.5
Spipo4G0013400	Spirodela polyrhiza	HOM04x5M005349	ORTHO04x5M005119	3.2e-22	109.8	109	52.3
Zm00007a00051045	Zea mays B104	HOM04x5M005349	ORTHO04x5M005119	1.6e-21	107.5	263	41.8
Zm00007a00048964	Zea mays B104	HOM04x5M005349	ORTHO04x5M005119	3.0e-20	103.2	116	46.6
Zm00001d002145	Zea mays B73	HOM04x5M005349	ORTHO04x5M005119	5.1e-20	102.4	218	37.2
PEQU_16086	Phalaenopsis equestris	HOM04x5M005349	ORTHO04x5M005119	7.7e-16	88.6	391	25.6
MCO12G391	Micromonas commoda	HOM04x5M005349	ORTHO04x5M005119	7.2e-14	82.0	228	25.4
PEQU_16085	Phalaenopsis equestris	HOM04x5M005349	ORTHO04x5M005119	4.4e-11	72.8	74	54.1
PAB00020284	Picea abies	HOM04x5M005349	ORTHO04x5M005119	2.7e-08	63.5	88	44.3
PAB00030553	Picea abies	HOM04x5M033833	ORTHO04x5M005119	2.5e-06	57.0	54	55.6
PAB00044123	Picea abies	HOM04x5M033833	ORTHO04x5M005119	4.2e-06	56.2	54	51.9

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment