Interactive Phylogenetics Module

Gene Id
AT4G39680

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Include Gene ID Organism Homologous gene familyOrthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G39680 Arabidopsis thaliana HOM04x5M002765 ORTHO04x5M002964 4.8e-265 916.4 634 100.0
Potri.007G086900 Populus trichocarpa HOM04x5M002765 ORTHO04x5M002964 1.7e-97 359.8 455 60.2
GSVIVG01022190001 Vitis vinifera HOM04x5M002765 ORTHO04x5M002964 3.8e-84 315.5 378 63.2
p5.00_sc00054_p0053 Elaeis guineensis HOM04x5M002765 ORTHO04x5M002964 5.8e-77 291.6 684 44.6
Spipo15G0007700 Spirodela polyrhiza HOM04x5M002765 ORTHO04x5M002964 2.9e-76 289.3 685 42.2
evm.TU.AsparagusV1_03.145.V1.1 Asparagus officinalis HOM04x5M002765 ORTHO04x5M002964 3.8e-76 288.9 470 51.5
Potri.005G080500 Populus trichocarpa HOM04x5M002765 ORTHO04x5M002964 3.8e-76 288.9 370 60.8
Aco004109 Ananas comosus HOM04x5M002765 ORTHO04x5M002964 6.0e-74 281.6 700 41.6
p5.00_sc00031_p0021 Elaeis guineensis HOM04x5M002765 ORTHO04x5M002964 6.0e-74 281.6 661 43.1
Aco009582 Ananas comosus HOM04x5M002765 ORTHO04x5M002964 2.5e-72 276.2 468 53.2
CALSI_Maker00002259 Calamus simplicifolius HOM04x5M002765 ORTHO04x5M002964 4.3e-72 275.4 576 38.9
Ma02_g23960 Musa acuminata HOM04x5M002765 ORTHO04x5M002964 2.1e-71 273.1 482 48.1
Sobic.001G354600 Sorghum bicolor HOM04x5M002765 ORTHO04x5M002964 2.8e-71 272.7 453 53.6
Zm00001d047191 Zea mays B73 HOM04x5M002765 ORTHO04x5M002964 2.6e-69 266.2 448 51.6
Zm00007a00005685 Zea mays B104 HOM04x5M002765 ORTHO04x5M002964 2.6e-69 266.2 448 51.6
Ma03_g22290 Musa acuminata HOM04x5M002765 ORTHO04x5M002964 3.4e-69 265.8 452 42.5
PH01001220G0200 Phyllostachys edulis HOM04x5M002765 ORTHO04x5M002964 4.5e-69 265.4 526 45.4
HORVU4Hr1G037030 Hordeum vulgare HOM04x5M002765 ORTHO04x5M002964 1.7e-68 263.5 536 47.6
PEQU_33916 Phalaenopsis equestris HOM04x5M002765 ORTHO04x5M002964 2.2e-68 263.1 466 51.1
Sspon.01G0011010-2B Saccharum spontaneum HOM04x5M002765 ORTHO04x5M002964 4.9e-68 261.9 447 52.1
Zosma224g00150 Zostera marina HOM04x5M002765 ORTHO04x5M002964 4.9e-68 261.9 662 39.6
Sspon.01G0011010-3C Saccharum spontaneum HOM04x5M002765 ORTHO04x5M002964 8.4e-68 261.2 447 51.9
Sspon.01G0011010-1P Saccharum spontaneum HOM04x5M002765 ORTHO04x5M002964 1.1e-67 260.8 447 51.7
Misin02G332800 Miscanthus sinensis HOM04x5M002765 ORTHO04x5M002964 1.9e-67 260.0 447 51.2
Seita.9G383000 Setaria italica HOM04x5M002765 ORTHO04x5M002964 2.5e-67 259.6 469 50.3
Sspon.01G0011010-4D Saccharum spontaneum HOM04x5M002765 ORTHO04x5M002964 2.5e-67 259.6 447 51.9
TRITD4Av1G089480 Triticum turgidum HOM04x5M002765 ORTHO04x5M002964 2.5e-67 259.6 436 53.7
PH01003349G0010 Phyllostachys edulis HOM04x5M002765 ORTHO04x5M002964 3.2e-67 259.2 444 48.4
TraesCS4D02G165300 Triticum aestivum HOM04x5M002765 ORTHO04x5M002964 3.2e-67 259.2 550 46.0
Zjn_sc00127.1.g00010.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM04x5M002765 ORTHO04x5M002964 7.1e-67 258.1 502 46.8
TraesCS4A02G146400 Triticum aestivum HOM04x5M002765 ORTHO04x5M002964 9.3e-67 257.7 550 46.5
Zm00001d029352 Zea mays B73 HOM04x5M002765 ORTHO04x5M002964 1.6e-66 256.9 486 44.9
Zm00007a00018377 Zea mays B104 HOM04x5M002765 ORTHO04x5M002964 1.6e-66 256.9 486 44.9
Zm00008a001640 Zea mays PH207 HOM04x5M002765 ORTHO04x5M002964 1.6e-66 256.9 486 44.9
Pgl_GLEAN_10021859 Cenchrus americanus HOM04x5M002765 ORTHO04x5M002964 2.1e-66 256.5 468 50.2
OB03G28830 Oryza brachyantha HOM04x5M002765 ORTHO04x5M002964 4.6e-66 255.4 703 38.0
Bradi1g61000 Brachypodium distachyon HOM04x5M002765 ORTHO04x5M002964 1.0e-65 254.2 454 52.0
Misin01G326900 Miscanthus sinensis HOM04x5M002765 ORTHO04x5M002964 1.3e-65 253.8 448 51.3
TRITD4Bv1G096850 Triticum turgidum HOM04x5M002765 ORTHO04x5M002964 3.0e-65 252.7 547 45.9
GSVIVG01008977001 Vitis vinifera HOM04x5M002765 ORTHO04x5M002964 1.5e-64 250.4 352 47.7
LOC_Os03g26630 Oryza sativa ssp. japonica HOM04x5M002765 ORTHO04x5M002964 5.7e-64 248.4 448 50.9
OsR498G0306056800.01 Oryza sativa ssp. indica HOM04x5M002765 ORTHO04x5M002964 2.1e-63 246.5 448 50.9
PH01000068G1860 Phyllostachys edulis HOM04x5M002765 ORTHO04x5M002964 6.9e-62 241.5 483 40.2
CALSI_Maker00011559 Calamus simplicifolius HOM04x5M002765 ORTHO04x5M002964 3.4e-61 239.2 648 41.8
Sspon.01G0011010-1A Saccharum spontaneum HOM04x5M002765 ORTHO04x5M002964 2.5e-59 233.0 401 52.9
Pgl_GLEAN_10006199 Cenchrus americanus HOM04x5M004135 ORTHO04x5M004772 1.6e-58 230.3 447 42.5
Misin03G339200 Miscanthus sinensis HOM04x5M002765 ORTHO04x5M002964 2.1e-58 229.9 372 43.3
ATR0564G189 Amborella trichopoda HOM04x5M002765 ORTHO04x5M002964 1.0e-57 227.6 399 52.9
ASH_gene17476 Apostasia shenzhenica HOM04x5M002765 ORTHO04x5M002964 3.9e-57 225.7 352 51.4
Zosma241g00230 Zostera marina HOM04x5M002765 ORTHO04x5M002964 4.3e-56 222.2 666 36.8
Zm00008a035100 Zea mays PH207 HOM04x5M002765 ORTHO04x5M002964 6.9e-54 214.9 447 47.4
LP012622 Lolium perenne HOM04x5M002765 ORTHO04x5M002964 9.1e-54 214.5 510 44.7
Sspon.02G0047000-1C Saccharum spontaneum HOM04x5M002765 ORTHO04x5M002964 2.2e-52 209.9 373 40.5
LOC_Os07g43316 Oryza sativa ssp. japonica HOM04x5M002765 ORTHO04x5M002964 1.1e-51 207.6 283 45.6
OsR498G0714789300.01 Oryza sativa ssp. indica HOM04x5M002765 ORTHO04x5M002964 1.1e-51 207.6 283 45.6
PH01000064G1200 Phyllostachys edulis HOM04x5M002765 ORTHO04x5M002964 9.4e-51 204.5 563 34.1
ATR0307G099 Amborella trichopoda HOM04x5M002765 ORTHO04x5M002964 1.1e-48 197.6 757 35.8
TraesCS2A02G160300 Triticum aestivum HOM04x5M002765 ORTHO04x5M002964 1.5e-48 197.2 488 37.3
TRITD2Av1G049810 Triticum turgidum HOM04x5M002765 ORTHO04x5M002964 1.5e-48 197.2 488 37.3
OB07G28450 Oryza brachyantha HOM04x5M002765 ORTHO04x5M002964 3.3e-48 196.1 496 36.3
Zm00008a029409 Zea mays PH207 HOM04x5M002765 ORTHO04x5M002964 1.8e-46 190.3 392 37.5
LP031689 Lolium perenne HOM04x5M002765 ORTHO04x5M002964 4.1e-46 189.1 532 35.0
TraesCS2D02G167700 Triticum aestivum HOM04x5M002765 ORTHO04x5M002964 3.4e-45 186.0 487 34.9
TraesCS2B02G186600 Triticum aestivum HOM04x5M002765 ORTHO04x5M002964 2.2e-44 183.3 486 35.4
TRITD2Bv1G061840 Triticum turgidum HOM04x5M002765 ORTHO04x5M002964 2.2e-44 183.3 486 35.4
Zm00001d022198 Zea mays B73 HOM04x5M002765 ORTHO04x5M002964 2.2e-44 183.3 254 46.1
Solyc04g072670.2 Solanum lycopersicum HOM04x5M002765 ORTHO04x5M002964 1.4e-43 180.6 555 33.0
Bradi1g20715 Brachypodium distachyon HOM04x5M002765 ORTHO04x5M002964 3.6e-42 176.0 484 33.5
HORVU2Hr1G029250 Hordeum vulgare HOM04x5M002765 ORTHO04x5M002964 3.3e-40 169.5 367 38.4
ATR0829G029 Amborella trichopoda HOM04x5M002765 ORTHO04x5M002964 7.4e-40 168.3 299 43.8
Pp3c9_18590 Physcomitrium patens HOM04x5M002765 ORTHO04x5M002964 1.1e-35 154.5 348 39.9
Oropetium_20150105_19709 Oropetium thomaeum HOM04x5M002765 ORTHO04x5M002964 5.5e-35 152.1 500 36.8
Pp3c15_22110 Physcomitrium patens HOM04x5M002765 ORTHO04x5M002964 9.4e-35 151.4 342 35.7
Pp3c15_22112 Physcomitrium patens HOM04x5M002765 ORTHO04x5M002964 9.4e-35 151.4 342 35.7
PAB00052523 Picea abies HOM04x5M002765 ORTHO04x5M002964 5.2e-33 145.6 454 32.8
Seita.2G397100 Setaria italica HOM04x5M002765 ORTHO04x5M002964 6.7e-33 145.2 374 36.9
Mapoly0042s0123 Marchantia polymorpha HOM04x5M002765 ORTHO04x5M002964 1.5e-32 144.1 360 40.6
Zm00007a00050233 Zea mays B104 HOM04x5M002765 ORTHO04x5M002964 2.7e-29 133.3 217 42.4
Zjn_sc00010.1.g00190.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM04x5M002765 ORTHO04x5M002964 1.0e-28 131.3 661 30.3
Misin04G363700 Miscanthus sinensis HOM04x5M002765 ORTHO04x5M002964 1.8e-17 94.0 64 71.9
ATR0118G020 Amborella trichopoda HOM04x5M002765 ORTHO04x5M002964 5.2e-17 92.4 226 37.6
Zm00007a00031082 Zea mays B104 HOM04x5M002765 ORTHO04x5M002964 5.9e-13 79.0 152 36.8
Cre03.g204950 Chlamydomonas reinhardtii HOM04x5M002765 ORTHO04x5M002964 7.5e-08 62.0 80 36.2
PAB00009256 Picea abies HOM04x5M002765 ORTHO04x5M002964 9.2e-06 55.1 29 89.7
PAB00040328 Picea abies HOM04x5M002765 ORTHO04x5M002964 9.2e-06 55.1 29 89.7

Amborella trichopoda (4 genes)
Ananas comosus (2 genes)
Apostasia shenzhenica (1 genes)
Arabidopsis thaliana (1 genes)
Asparagus officinalis (1 genes)
Brachypodium distachyon (2 genes)
Calamus simplicifolius (2 genes)
Cenchrus americanus (2 genes)
Chlamydomonas reinhardtii (1 genes)
Elaeis guineensis (2 genes)
Hordeum vulgare (2 genes)
Lolium perenne (2 genes)
Marchantia polymorpha (1 genes)
Micromonas commoda (0 genes)
Miscanthus sinensis (4 genes)
Musa acuminata (2 genes)
Oropetium thomaeum (1 genes)
Oryza brachyantha (2 genes)
Oryza sativa ssp. indica (2 genes)
Oryza sativa ssp. japonica (2 genes)
Phalaenopsis equestris (1 genes)
Phyllostachys edulis (4 genes)
Physcomitrium patens (3 genes)
Picea abies (3 genes)
Populus trichocarpa (2 genes)
Saccharum spontaneum (6 genes)
Selaginella moellendorffii (0 genes)
Setaria italica (2 genes)
Solanum lycopersicum (1 genes)
Sorghum bicolor (1 genes)
Spirodela polyrhiza (1 genes)
Triticum aestivum (5 genes)
Triticum turgidum (4 genes)
Vitis vinifera (2 genes)
Zea mays B73 (3 genes)
Zea mays B104 (4 genes)
Zea mays PH207 (3 genes)
Zostera marina (2 genes)
Zoysia japonica ssp. nagirizaki (2 genes)

Program Settings