Monocots PLAZA 4.5 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
AT2G41010	Arabidopsis thaliana	HOM04x5M007249	ORTHO04x5M001531	2.8e-117	424.1	239	100.0
AT3G56880	Arabidopsis thaliana	HOM04x5M007249	ORTHO04x5M001531	1.3e-48	196.1	249	59.0
Potri.016G029600	Populus trichocarpa	HOM04x5M007249	ORTHO04x5M001531	1.4e-26	122.9	175	48.0
Potri.006G032300	Populus trichocarpa	HOM04x5M007249	ORTHO04x5M001531	2.2e-24	115.5	198	42.9
CALSI_Maker00040309	Calamus simplicifolius	HOM04x5M007249	ORTHO04x5M001531	1.4e-15	86.3	182	40.1
CALSI_Maker00019273	Calamus simplicifolius	HOM04x5M007249	ORTHO04x5M001531	4.1e-15	84.7	181	40.3
p5.00_sc01208_p0001	Elaeis guineensis	HOM04x5M007249	ORTHO04x5M001531	9.1e-15	83.6	196	36.2
p5.00_sc00003_p0447	Elaeis guineensis	HOM04x5M007249	ORTHO04x5M001531	1.5e-14	82.8	140	41.4
Solyc10g077130.1	Solanum lycopersicum	HOM04x5M007249	ORTHO04x5M001531	2.6e-14	82.0	235	30.2
ASH_gene5541	Apostasia shenzhenica	HOM04x5M007249	ORTHO04x5M001531	7.7e-14	80.5	139	38.8
Aco023939	Ananas comosus	HOM04x5M007249	ORTHO04x5M001531	2.9e-13	78.6	142	39.4
Ma08_g22340	Musa acuminata	HOM04x5M007249	ORTHO04x5M001531	2.9e-13	78.6	140	37.9
Ma02_g01190	Musa acuminata	HOM04x5M007249	ORTHO04x5M001531	5.0e-13	77.8	164	36.0
p5.00_sc00210_p0028	Elaeis guineensis	HOM04x5M007249	ORTHO04x5M001531	8.5e-13	77.0	236	31.8
ASH_gene8631	Apostasia shenzhenica	HOM04x5M007249	ORTHO04x5M001531	4.2e-12	74.7	182	35.2
Ma02_g01750	Musa acuminata	HOM04x5M007249	ORTHO04x5M001531	4.2e-12	74.7	164	36.0
Ma05_g07520	Musa acuminata	HOM04x5M007249	ORTHO04x5M001531	1.2e-11	73.2	136	39.7
Ma10_g01800	Musa acuminata	HOM04x5M007249	ORTHO04x5M001531	2.1e-11	72.4	194	33.5
CALSI_Maker00011591	Calamus simplicifolius	HOM04x5M007249	ORTHO04x5M001531	4.7e-11	71.2	205	33.7
PEQU_39100	Phalaenopsis equestris	HOM04x5M007249	ORTHO04x5M001531	6.1e-11	70.9	141	39.0
PEQU_10706	Phalaenopsis equestris	HOM04x5M007249	ORTHO04x5M001531	1.0e-10	70.1	171	35.7
Seita.8G004900	Setaria italica	HOM04x5M008056	ORTHO04x5M001531	1.4e-10	69.7	140	37.1
Ma05_g30010	Musa acuminata	HOM04x5M007249	ORTHO04x5M001531	4.0e-10	68.2	142	37.3
Aco001722	Ananas comosus	HOM04x5M007249	ORTHO04x5M001531	5.7e-09	64.3	141	34.8
ASH_gene19154	Apostasia shenzhenica	HOM04x5M007249	ORTHO04x5M001531	9.7e-09	63.5	136	32.4
ATR1096G063	Amborella trichopoda	HOM04x5M007249	ORTHO04x5M001531	9.7e-09	63.5	178	37.1
Ma07_g02480	Musa acuminata	HOM04x5M007249	ORTHO04x5M001531	1.3e-08	63.2	178	33.1
PH01001134G0540	Phyllostachys edulis	HOM04x5M008056	ORTHO04x5M001531	1.3e-08	63.2	141	34.8
PH01000266G0360	Phyllostachys edulis	HOM04x5M007249	ORTHO04x5M001531	8.2e-08	60.5	83	39.8
PH01001184G0450	Phyllostachys edulis	HOM04x5M004884	ORTHO04x5M001531	8.2e-08	60.5	152	32.2
CALSI_Maker00049138	Calamus simplicifolius	HOM04x5M007249	ORTHO04x5M001531	1.1e-07	60.1	58	51.7
Ma06_g33730	Musa acuminata	HOM04x5M007249	ORTHO04x5M001531	1.8e-07	59.3	141	31.9
TraesCS3B02G219100	Triticum aestivum	HOM04x5M013824	ORTHO04x5M001531	2.4e-07	58.9	166	33.1
Oropetium_20150105_18021	Oropetium thomaeum	HOM04x5M007249	ORTHO04x5M001531	3.1e-07	58.5	107	34.6
LP039190	Lolium perenne	HOM04x5M008056	ORTHO04x5M001531	4.1e-07	58.2	147	32.0
Ma03_g09260	Musa acuminata	HOM04x5M007249	ORTHO04x5M001531	5.3e-07	57.8	198	31.8
Seita.2G439500	Setaria italica	HOM04x5M004884	ORTHO04x5M001531	5.3e-07	57.8	140	32.1
TraesCS5D02G151600	Triticum aestivum	HOM04x5M008056	ORTHO04x5M001531	1.6e-06	56.2	141	32.6
Seita.7G309400	Setaria italica	HOM04x5M008056	ORTHO04x5M001531	3.5e-06	55.1	82	40.2
TraesCS5A02G140900	Triticum aestivum	HOM04x5M008056	ORTHO04x5M001531	3.5e-06	55.1	143	33.6
TraesCS3A02G190200	Triticum aestivum	HOM04x5M013824	ORTHO04x5M001531	3.5e-06	55.1	161	31.1
TRITD5Av1G107020	Triticum turgidum	HOM04x5M008056	ORTHO04x5M001531	3.5e-06	55.1	143	33.6
TRITD3Av1G096170	Triticum turgidum	HOM04x5M013824	ORTHO04x5M001531	3.5e-06	55.1	161	31.1
HORVU0Hr1G039840	Hordeum vulgare	HOM04x5M013824	ORTHO04x5M001531	4.5e-06	54.7	156	31.4
TraesCS2B02G115100	Triticum aestivum	HOM04x5M004884	ORTHO04x5M001531	4.5e-06	54.7	202	29.7
HORVU0Hr1G010810	Hordeum vulgare	HOM04x5M008056	ORTHO04x5M001531	7.7e-06	53.9	143	34.3

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment