Monocots PLAZA 4.5 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
AT1G69680	Arabidopsis thaliana	HOM04x5M005213	ORTHO04x5M006204	2.0e-108	394.4	203	100.0
Solyc01g010810.2	Solanum lycopersicum	HOM04x5M005213	ORTHO04x5M006204	7.1e-77	289.7	202	69.3
Potri.013G050600	Populus trichocarpa	HOM04x5M005213	ORTHO04x5M006204	9.6e-74	279.3	200	69.0
Potri.013G049900	Populus trichocarpa	HOM04x5M005213	ORTHO04x5M006204	9.6e-74	279.3	200	69.0
Ma03_g02990	Musa acuminata	HOM04x5M005213	ORTHO04x5M006204	1.5e-71	271.9	195	69.2
Aco001128	Ananas comosus	HOM04x5M005213	ORTHO04x5M006204	7.6e-71	269.6	203	65.5
p5.00_sc00035_p0043	Elaeis guineensis	HOM04x5M005213	ORTHO04x5M006204	1.7e-70	268.5	203	66.0
OB04G22210	Oryza brachyantha	HOM04x5M005213	ORTHO04x5M006204	2.2e-70	268.1	203	66.0
ATR0564G205	Amborella trichopoda	HOM04x5M005213	ORTHO04x5M006204	3.8e-70	267.3	198	68.2
LOC_Os04g38610	Oryza sativa ssp. japonica	HOM04x5M005213	ORTHO04x5M006204	8.4e-70	266.2	203	67.0
PEQU_07157	Phalaenopsis equestris	HOM04x5M005213	ORTHO04x5M006204	9.3e-69	262.7	200	62.5
Seita.7G123500	Setaria italica	HOM04x5M005213	ORTHO04x5M006204	1.2e-68	262.3	198	65.2
Oropetium_20150105_20701	Oropetium thomaeum	HOM04x5M005213	ORTHO04x5M006204	2.1e-68	261.5	195	66.7
Bradi5g12340	Brachypodium distachyon	HOM04x5M005213	ORTHO04x5M006204	1.0e-67	259.2	203	64.5
Zm00001d003428	Zea mays B73	HOM04x5M005213	ORTHO04x5M006204	3.9e-67	257.3	198	64.1
TraesCS2D02G323100	Triticum aestivum	HOM04x5M005213	ORTHO04x5M006204	5.1e-67	256.9	203	64.0
Misin12G105300	Miscanthus sinensis	HOM04x5M005213	ORTHO04x5M006204	6.7e-67	256.5	198	64.1
TraesCS2D02G323400	Triticum aestivum	HOM04x5M005213	ORTHO04x5M006204	8.7e-67	256.1	203	64.0
Sobic.006G106000	Sorghum bicolor	HOM04x5M005213	ORTHO04x5M006204	1.1e-66	255.8	198	63.6
TraesCS2B02G342300	Triticum aestivum	HOM04x5M005213	ORTHO04x5M006204	1.5e-66	255.4	195	66.2
TRITD2Bv1G162170	Triticum turgidum	HOM04x5M005213	ORTHO04x5M006204	1.5e-66	255.4	195	66.2
Bradi1g77340	Brachypodium distachyon	HOM04x5M005213	ORTHO04x5M006204	3.3e-66	254.2	203	63.1
Sspon.05G0025430-3D	Saccharum spontaneum	HOM04x5M005213	ORTHO04x5M006204	3.3e-66	254.2	198	63.1
TraesCS2A02G344800	Triticum aestivum	HOM04x5M005213	ORTHO04x5M006204	2.8e-65	251.1	203	63.1
Zjn_sc00058.1.g00920.1.sm.mkhc	Zoysia japonica ssp. nagirizaki	HOM04x5M005213	ORTHO04x5M006204	4.8e-65	250.4	190	65.3
LP001374	Lolium perenne	HOM04x5M005213	ORTHO04x5M006204	8.1e-65	249.6	195	64.1
Sspon.05G0025430-2C	Saccharum spontaneum	HOM04x5M005213	ORTHO04x5M006204	1.4e-64	248.8	199	62.8
Misin11G094800	Miscanthus sinensis	HOM04x5M005213	ORTHO04x5M006204	1.8e-64	248.4	198	63.1
Spipo4G0022700	Spirodela polyrhiza	HOM04x5M005213	ORTHO04x5M006204	1.6e-60	235.3	201	58.2
ASH_gene18119	Apostasia shenzhenica	HOM04x5M005213	ORTHO04x5M006204	2.7e-60	234.6	196	61.7
OsR498G0408696400.01	Oryza sativa ssp. indica	HOM04x5M005213	ORTHO04x5M006204	1.3e-59	232.3	203	61.1
GSVIVG01020010001	Vitis vinifera	HOM04x5M005213	ORTHO04x5M006204	2.3e-59	231.5	168	68.5
Zm00008a007184	Zea mays PH207	HOM04x5M005213	ORTHO04x5M006204	1.1e-56	222.6	174	63.2
CALSI_Maker00050995	Calamus simplicifolius	HOM04x5M005213	ORTHO04x5M006204	1.8e-56	221.9	201	57.7
TRITD2Av1G198930	Triticum turgidum	HOM04x5M005213	ORTHO04x5M006204	5.3e-56	220.3	203	58.1
Zosma10g00250	Zostera marina	HOM04x5M005213	ORTHO04x5M006204	2.0e-55	218.4	195	57.4
Sspon.05G0025430-1B	Saccharum spontaneum	HOM04x5M005213	ORTHO04x5M006204	2.2e-54	214.9	198	56.1
Pgl_GLEAN_10010567	Cenchrus americanus	HOM04x5M005213	ORTHO04x5M006204	8.4e-54	213.0	153	69.3
PEQU_19562	Phalaenopsis equestris	HOM04x5M005213	ORTHO04x5M006204	6.0e-52	206.8	195	56.4
Pp3c9_14930	Physcomitrium patens	HOM04x5M005213	ORTHO04x5M006204	2.3e-51	204.9	191	53.4
Zm00007a00014076	Zea mays B104	HOM04x5M005213	ORTHO04x5M006204	2.3e-51	204.9	153	66.7
Pgl_GLEAN_10031485	Cenchrus americanus	HOM04x5M005213	ORTHO04x5M006204	1.1e-50	202.6	150	66.7
gene14013	Selaginella moellendorffii	HOM04x5M005213	ORTHO04x5M006204	3.1e-48	194.5	198	53.5
HORVU1Hr1G022110	Hordeum vulgare	HOM04x5M005213	ORTHO04x5M006204	2.0e-47	191.8	144	67.4
gene36411	Selaginella moellendorffii	HOM04x5M005213	ORTHO04x5M006204	2.0e-47	191.8	198	53.0
HORVU4Hr1G018420	Hordeum vulgare	HOM04x5M005213	ORTHO04x5M006204	1.6e-41	172.2	140	62.9
Pp3c15_14240	Physcomitrium patens	HOM04x5M005213	ORTHO04x5M006204	6.7e-35	150.2	144	53.5
Mapoly0113s0045	Marchantia polymorpha	HOM04x5M005213	ORTHO04x5M006204	5.3e-32	140.6	206	41.3
evm.TU.AsparagusV1_02.1816.V1.1	Asparagus officinalis	HOM04x5M005213	ORTHO04x5M006204	3.4e-31	137.9	111	62.2
PAB00035188	Picea abies	HOM04x5M005213	ORTHO04x5M006204	5.0e-30	134.0	110	59.1
Potri.019G023800	Populus trichocarpa	HOM04x5M005213	ORTHO04x5M006204	1.6e-28	129.0	84	72.6
MCO13G325	Micromonas commoda	HOM04x5M005213	ORTHO04x5M006204	2.0e-26	122.1	197	40.1
PAB00045118	Picea abies	HOM04x5M005213	ORTHO04x5M006204	2.8e-25	118.2	90	63.3
PAB00048707	Picea abies	HOM04x5M005213	ORTHO04x5M006204	1.4e-16	89.4	89	46.1
Cre05.g244850	Chlamydomonas reinhardtii	HOM04x5M005213	ORTHO04x5M006204	1.7e-14	82.4	200	28.5
HORVU5Hr1G040980	Hordeum vulgare	HOM04x5M005213	ORTHO04x5M006204	2.0e-10	68.9	59	54.2

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment