Monocots PLAZA 4.5 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
ASH_gene8571	Apostasia shenzhenica	HOM04x5M001523	ORTHO04x5M016727	2.3e-85	318.2	256	100.0
p5.00_sc00211_p0002	Elaeis guineensis	HOM04x5M001523	ORTHO04x5M016727	3.5e-41	171.4	202	62.4
Ma02_g03510	Musa acuminata	HOM04x5M001523	ORTHO04x5M001589	1.8e-29	132.5	226	51.3
evm.TU.AsparagusV1_02.2052.V1.1	Asparagus officinalis	HOM04x5M001523	ORTHO04x5M001589	4.2e-26	121.3	116	58.6
Bradi2g36005	Brachypodium distachyon	HOM04x5M001523	ORTHO04x5M001589	3.6e-17	91.7	117	55.6
CALSI_Maker00048187	Calamus simplicifolius	HOM04x5M001523	ORTHO04x5M016727	4.7e-17	91.3	79	64.6
TraesCS1D02G093800	Triticum aestivum	HOM04x5M001523	ORTHO04x5M001589	1.5e-15	86.3	117	53.8
TraesCS1B02G112600	Triticum aestivum	HOM04x5M001523	ORTHO04x5M001589	1.5e-15	86.3	117	53.8
TRITD1Bv1G044830	Triticum turgidum	HOM04x5M001523	ORTHO04x5M001589	1.5e-15	86.3	117	53.8
ATR0706G100	Amborella trichopoda	HOM04x5M001523	ORTHO04x5M001589	2.0e-15	85.9	173	38.2
GSVIVG01004935001	Vitis vinifera	HOM04x5M001523	ORTHO04x5M001589	7.5e-15	84.0	218	45.9
TRITD1Av1G041990	Triticum turgidum	HOM04x5M001523	ORTHO04x5M001589	2.2e-14	82.4	117	53.0
Oropetium_20150105_15532	Oropetium thomaeum	HOM04x5M001523	ORTHO04x5M001589	4.8e-14	81.3	118	50.8
LOC_Os05g05580	Oryza sativa ssp. japonica	HOM04x5M001523	ORTHO04x5M001589	1.1e-13	80.1	118	50.0
Aco007293	Ananas comosus	HOM04x5M001523	ORTHO04x5M001589	9.1e-13	77.0	113	45.1
CALSI_Maker00018832	Calamus simplicifolius	HOM04x5M001523	ORTHO04x5M001589	1.2e-12	76.6	238	42.9
LP007813	Lolium perenne	HOM04x5M001523	ORTHO04x5M001589	1.0e-11	73.6	126	47.6
Potri.003G164100	Populus trichocarpa	HOM04x5M001523	ORTHO04x5M001589	1.7e-11	72.8	111	42.3
Zm00001d024833	Zea mays B73	HOM04x5M001523	ORTHO04x5M001589	2.2e-11	72.4	119	47.9
Zm00007a00006561	Zea mays B104	HOM04x5M001523	ORTHO04x5M001589	2.2e-11	72.4	119	47.9
Zm00008a037492	Zea mays PH207	HOM04x5M001523	ORTHO04x5M001589	2.2e-11	72.4	119	47.9
Solyc05g023770.2	Solanum lycopersicum	HOM04x5M001523	ORTHO04x5M001589	5.0e-11	71.2	106	41.5
p5.00_sc00057_p0063	Elaeis guineensis	HOM04x5M001523	ORTHO04x5M001589	6.5e-11	70.9	210	43.8
Solyc03g118390.2	Solanum lycopersicum	HOM04x5M001523	ORTHO04x5M001589	8.5e-11	70.5	232	33.6
Misin17G049700	Miscanthus sinensis	HOM04x5M001523	ORTHO04x5M001589	1.6e-09	66.2	119	47.1
Sspon.07G0013220-1T	Saccharum spontaneum	HOM04x5M001523	ORTHO04x5M001589	1.6e-09	66.2	119	47.1
Seita.3G038900	Setaria italica	HOM04x5M001523	ORTHO04x5M001589	2.1e-09	65.9	124	46.8
Sspon.07G0013220-3D	Saccharum spontaneum	HOM04x5M001523	ORTHO04x5M001589	2.1e-09	65.9	119	47.1
Misin16G054100	Miscanthus sinensis	HOM04x5M001523	ORTHO04x5M001589	8.0e-09	63.9	116	47.4
Ma09_g01020	Musa acuminata	HOM04x5M001523	ORTHO04x5M001589	1.0e-08	63.5	206	38.8
ASH_gene19761	Apostasia shenzhenica	HOM04x5M001523	ORTHO04x5M001589	1.4e-08	63.2	215	34.9
Sspon.07G0013220-1A	Saccharum spontaneum	HOM04x5M001523	ORTHO04x5M001589	2.3e-08	62.4	115	47.0
GSVIVG01008631001	Vitis vinifera	HOM04x5M001523	ORTHO04x5M001589	6.8e-08	60.8	185	43.8
Sspon.07G0013220-2B	Saccharum spontaneum	HOM04x5M001523	ORTHO04x5M001589	2.6e-07	58.9	119	44.5
Aco015077	Ananas comosus	HOM04x5M001523	ORTHO04x5M001589	3.4e-07	58.5	79	43.0
p5.00_sc01766_p0001	Elaeis guineensis	HOM04x5M001523	ORTHO04x5M001589	2.2e-06	55.8	78	43.6
CALSI_Maker00016663	Calamus simplicifolius	HOM04x5M001523	ORTHO04x5M001589	6.3e-06	54.3	83	39.8

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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