Populus trichocarpa

The black cottonwood is a tree common to western parts of North America. Although closely related species are common in other parts of the world. This species has a couple features making it an interesting model organism for biology. The genome size is only 4x that of Arabidopsis. Techniques for high-throughput transformation are available, that in combination with the genome sequence become valuable tools to create transgenic plants. As the cottonwood can grow on marginal lands, where it is commonly used as windbreaks, it can also be used as a crop for second generation bio-fuels.

Publication:
The genome of black cottonwood, Populus trichocarpa.

Info and Links

Source JGI v3.1
PLAZA identifier ptr
NCBI link Populus trichocarpa
Mitochondrion Not available
Chloroplast Not available

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Annotations

Page 1 of 2148, showing 20 records out of 42950 total, starting on record 1, ending on 20

Gene Transcript Start Stop Strand Chr Type Homologous gene familyOrthologous gene family
Potri.T086001Potri.T086001.1115742117216-scaffold_99codingHOM04D004890ORTHO04D005769
Potri.T086100Potri.T086100.4120870122267-scaffold_99codingHOM04D000046ORTHO04D000018
Potri.T042650Potri.T042650.11382067+scaffold_99codingHOM04D001002ORTHO04D000538
Potri.T085500Potri.T085500.22677330624-scaffold_99codingHOM04D000046ORTHO04D000018
Potri.T085300Potri.T085300.11678718980+scaffold_99codingHOM04D005204ORTHO04D007036
Potri.T085800Potri.T085800.1105362109444-scaffold_99codingHOM04D000046ORTHO04D000018
Potri.T085900Potri.T085900.2113735114385+scaffold_99codingHOM04D005204ORTHO04D027890
Potri.T085600Potri.T085600.16393064130+scaffold_99codingOrphan GeneOrphan Gene
Potri.T085700Potri.T085700.18660788283-scaffold_99codingHOM04D000046ORTHO04D000018
Potri.T085400Potri.T085400.11981521890-scaffold_99codingHOM04D004890ORTHO04D005769
Potri.T178700Potri.T178700.220063223+scaffold_1833codingHOM04D000099ORTHO04D000035
Potri.T085000Potri.T085000.2100492102498+scaffold_95codingHOM04D000041ORTHO04D000194
Potri.T084000Potri.T084000.134904186+scaffold_95codingHOM04D002075ORTHO04D006357
Potri.T084900Potri.T084900.19578998212+scaffold_95codingHOM04D000041ORTHO04D000194
Potri.T084100Potri.T084100.21385715498+scaffold_95codingHOM04D012069ORTHO04D011375
Potri.T084200Potri.T084200.11707119494+scaffold_95codingHOM04D000041ORTHO04D000194
Potri.T084300Potri.T084300.42181324230+scaffold_95codingHOM04D000041ORTHO04D000194
Potri.T085200Potri.T085200.1132043132456+scaffold_95codingHOM04D002579ORTHO04D002872
Potri.T084600Potri.T084600.16068861338+scaffold_95codingHOM04D000041ORTHO04D000194
Potri.T084400Potri.T084400.13897340285+scaffold_95codingHOM04D000041ORTHO04D000194