Oryza sativa ssp. japonica

The rice genome was sequenced because of it's major importance in the world food industry and it's relatively small genome size. Since the first sequenced plant genome (Arabidopsis thalia) was a dicotylous plant it made sense to sequence a monocot next to have a broad taxonomix sampling. Unlike many of the recently sequenced genomes the sequencing has been done using a BAC-by-BAC approach a very costly a labour intensive procedure. But this yields a very high quality genome that can be assembled into chromosomes.

Publication:
The map-based sequence of the rice genome.

Info and Links

Source JGI v7.0
PLAZA identifier osa
NCBI link Oryza sativa ssp. japonica
Mitochondrion Not available
Chloroplast Not available

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Page 1 of 2110, showing 20 records out of 42189 total, starting on record 1, ending on 20

Gene Transcript Start Stop Strand Chr Type Homologous gene familyOrthologous gene family
LOC_Os01g51770LOC_Os01g51770.12977048129773245-Chr1codingHOM04D000634ORTHO04D000553
LOC_Os01g19860LOC_Os01g19860.11126417011266136-Chr1codingHOM04D003400Orphan Gene
LOC_Os01g25470LOC_Os01g25470.11444271714444896-Chr1codingHOM04D000309ORTHO04D000200
LOC_Os01g04760LOC_Os01g04760.121627232162971-Chr1codingOrphan GeneOrphan Gene
LOC_Os01g04660LOC_Os01g04660.120976772100391+Chr1codingHOM04D001132ORTHO04D000992
LOC_Os01g45710LOC_Os01g45710.12595264125954080+Chr1codingOrphan GeneOrphan Gene
LOC_Os01g39150LOC_Os01g39150.12203683022037585+Chr1codingHOM04D000069Orphan Gene
LOC_Os01g27150LOC_Os01g27150.21513150015139267-Chr1codingHOM04D000338ORTHO04D000617
LOC_Os01g29260LOC_Os01g29260.11640062916403593+Chr1codingHOM04D001464ORTHO04D000687
LOC_Os01g31820LOC_Os01g31820.11743286217433638+Chr1codingOrphan GeneOrphan Gene
LOC_Os01g56290LOC_Os01g56290.13242463332426449+Chr1codingHOM04D004703ORTHO04D006317
LOC_Os01g72210LOC_Os01g72210.24187047141873654+Chr1codingHOM04D000308ORTHO04D000197
LOC_Os01g53560LOC_Os01g53560.13075350930760952+Chr1codingHOM04D005170ORTHO04D006395
LOC_Os01g12680LOC_Os01g12680.469913546993431+Chr1codingHOM04D000870ORTHO04D000727
LOC_Os01g70000LOC_Os01g70000.14049405440495520+Chr1codingHOM04D031285Orphan Gene
LOC_Os01g50320LOC_Os01g50320.12888555428890711+Chr1codingHOM04D005172ORTHO04D006055
LOC_Os01g52760LOC_Os01g52760.13035182930353432+Chr1codingHOM04D007009ORTHO04D009026
LOC_Os01g61720LOC_Os01g61720.33570986035712378-Chr1codingHOM04D000276ORTHO04D000654
LOC_Os01g57066LOC_Os01g57066.13295731732962793+Chr1codingHOM04D002681ORTHO04D003154
LOC_Os01g55470LOC_Os01g55470.13195749931961019-Chr1codingHOM04D000469ORTHO04D000239