Arabidopsis lyrata

Arabidopsis lyrata is, together with Arabidopsis thaliana, a member of the Arabidopsis genus. As the thaliana species is widely used as model organism within the green plants lineage, the sequencing of the lyrata species is expected to reveal important comparative genomic data with respect to genomic content, lifestyle differences, etc. The lyrate genome has approximately the same number of genes as the thaliana genome (33000 genes), but the genome itself is 50% larger, while the species only diverged approximately 5 million years ago.

Publication:
Improving the Annotation of Arabidopsis lyrata Using RNA-Seq Data.

Info and Links

Source JGI v2.1
PLAZA identifier aly
NCBI link Arabidopsis lyrata
Mitochondrion Not available
Chloroplast Not available

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Annotations

Page 1 of 1554, showing 20 records out of 31073 total, starting on record 1, ending on 20

Gene Transcript Start Stop Strand Chr Type Homologous gene familyOrthologous gene family
AL1G10010AL1G10010.t122503-scaffold_1codingHOM04D000588ORTHO04D000856
AL1G10020AL1G10020.t135296123-scaffold_1codingHOM04D000588ORTHO04D000856
AL1G10030AL1G10030.t174497610+scaffold_1codingHOM04D005194ORTHO04D007438
AL1G10040AL1G10040.t1957610471+scaffold_1codingHOM04D003154ORTHO04D003722
AL1G10050AL1G10050.t11065211872-scaffold_1codingHOM04D000927ORTHO04D000801
AL1G10060AL1G10060.t11273913357-scaffold_1codingHOM04D007644ORTHO04D009907
AL1G10070AL1G10070.t11372215363-scaffold_1codingHOM04D000284ORTHO04D000352
AL1G10080AL1G10080.t11568519443-scaffold_1codingHOM04D006458ORTHO04D008403
AL1G10090AL1G10090.t11971420589+scaffold_1codingHOM04D004140ORTHO04D005208
AL1G10102AL1G10102.t12968131614+scaffold_1codingHOM04D003670ORTHO04D004662
AL1G10104AL1G10104.t13308034752+scaffold_1codingHOM04D000034ORTHO04D000914
AL1G10110AL1G10110.t13561039593-scaffold_1codingHOM04D004174ORTHO04D004981
AL1G10120AL1G10120.t13996342531-scaffold_1codingHOM04D000216ORTHO04D001093
AL1G10130AL1G10130.t14315046157-scaffold_1codingHOM04D006330ORTHO04D008487
AL1G10140AL1G10140.t14640148614+scaffold_1codingHOM04D002843ORTHO04D003413
AL1G10150AL1G10150.t14887549123+scaffold_1codingOrphan GeneOrphan Gene
AL1G10160AL1G10160.t14957451000-scaffold_1codingHOM04D001828ORTHO04D001895
AL1G10170AL1G10170.t15152651882-scaffold_1codingHOM04D006274ORTHO04D007096
AL1G10180AL1G10180.t15597356447-scaffold_1codingHOM04D002882ORTHO04D001984
AL1G10190AL1G10190.t15759957850+scaffold_1codingOrphan GeneOrphan Gene