Dicots PLAZA 4.5 gene overview : Zm00001d051840

Gene: Zm00001d051840 (Zea mays)

Overview

Gene Identifier: Zm00001d051840
Transcript Identifier: Zm00001d051840_T002
Gene Type: Coding gene
Location: 4 : 171940933-171943993 : positive

Family Information

Homologous gene family: HOM04D000254
(847 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D003688
(105 genes in 53 species)
specific family

Descriptions

Description: Putative RH2 protein
RNA helicase 2

Identifiers

Type	Value
pid	Zm00001d051840_P002
tid	Zm00001d051840_T002
V3_identifier	GRMZM2G018947

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006397	IEA	PLAZA Integrative Orthology	mRNA processing	AT3G19760
GO:0001666	IEA	PLAZA Integrative Orthology	response to hypoxia	AT3G19760

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0005524	IEA	InterPro	ATP binding
GO:0003729	IEA	PLAZA Integrative Orthology	mRNA binding	AT3G19760
GO:0005515	IEA	PLAZA Integrative Orthology	protein binding	AT3G19760

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005730	IEA	PLAZA Integrative Orthology	nucleolus	AT3G19760
GO:0005654	IEA	PLAZA Integrative Orthology	nucleoplasm	AT3G19760
GO:0016020	IEA	PLAZA Integrative Orthology	membrane	AT3G19760
GO:0016607	IEA	PLAZA Integrative Orthology	nuclear speck	AT3G19760
GO:0035145	IEA	PLAZA Integrative Orthology	exon-exon junction complex	AT3G19760
GO:0005634	IEA	PLAZA Integrative Orthology	nucleus	AT3G19760

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR001650	Helicase, C-terminal
IPR011545	DEAD/DEAH box helicase domain
IPR000629	ATP-dependent RNA helicase DEAD-box, conserved site
IPR014001	Helicase superfamily 1/2, ATP-binding domain
IPR014014	RNA helicase, DEAD-box type, Q motif
IPR027417	P-loop containing nucleoside triphosphate hydrolase

Mapman id	Description
35.1	not assigned.annotated