Dicots PLAZA 4.5 gene overview : ZJU.LOC107427170

Gene: ZJU.LOC107427170 (Ziziphus jujuba)

Overview

Gene Identifier: ZJU.LOC107427170
Transcript Identifier: ZJU.XM_016037520.1
Gene Type: Coding gene
Location: NC_029687.1 : 14985588-14988784 : positive

Family Information

Homologous gene family: HOM04D000061
(2190 genes in 49 species)
specific family

Descriptions

Description: protein FAR1-RELATED SEQUENCE 5-like

Identifiers

Type	Value
id	LOC107427170
id	gene18830
tid	XM_016037520.1
tid	rna23648
GeneID	107427170
pid	XP_015893006.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006355	IEA	InterPro	regulation of transcription, DNA-templated

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0008270	IEA	PLAZA Homology (enrichment)	zinc ion binding	HOM04D000061

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR031052	FHY3/FAR1 family
IPR018289	MULE transposase domain

Mapman id	Description
15.5.46	.RNA biosynthesis.transcriptional regulation.transcription factor (FAR1)