Dicots PLAZA 4.5 gene overview : Tp3g27740

Gene: Tp3g27740 (Schrenkiella parvula)

Overview

Gene Identifier: Tp3g27740
Transcript Identifier: Tp3g27740.1
Gene Type: Coding gene
Location: ch3-5 : 1433515-1434000 : negative

Family Information

Homologous gene family: HOM04D000191
(1045 genes in 54 species)
specific family
Orthologous gene family: ORTHO04D000086
(1040 genes in 54 species)
specific family

Descriptions

Description: PR1 (PATHOGENESIS-RELATED GENE 1)

Identifiers

Type	Value

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0009414	IEA	PLAZA Integrative Orthology	response to water deprivation	AT2G14610
GO:0009723	IEA	PLAZA Integrative Orthology	response to ethylene	AT2G14580
GO:0010266	IEA	PLAZA Integrative Orthology	response to vitamin B1	AT2G14610
GO:0006952	IEA	PLAZA Integrative Orthology	defense response	AT2G14610
GO:0080027	IEA	PLAZA Integrative Orthology	response to herbivore	AT2G14580
GO:0009751	IEA	PLAZA Integrative Orthology	response to salicylic acid	AT2G14580
GO:0009753	IEA	PLAZA Integrative Orthology	response to jasmonic acid	AT2G14580
GO:0009611	IEA	PLAZA Integrative Orthology	response to wounding	AT2G14580
GO:0009627	IEA	PLAZA Integrative Orthology	systemic acquired resistance	AT2G14610
GO:0009814	IEA	PLAZA Integrative Orthology	defense response, incompatible interaction	AT2G14580
GO:0009617	IEA	PLAZA Integrative Orthology	response to bacterium	AT2G14580

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005576	IEA	InterPro	extracellular region
GO:0005618	IEA	PLAZA Integrative Orthology	cell wall	AT2G14610

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR034111	Pathogenesis-related protein 1-like, SCP domain
IPR014044	CAP domain
IPR001283	Cysteine-rich secretory protein, allergen V5/Tpx-1-related
IPR018244	Allergen V5/Tpx-1-related, conserved site

Mapman id	Description
35.1	not assigned.annotated