Gene: TPR.G5445 (Trifolium pratense)

Overview top

Gene Identifier
TPR.G5445
Transcript Identifier
TPR.T5635
Gene Type
Coding gene
Location
Tp57577_TGAC_v2_LG2 : 27480924-27485527 : positive

Family Information

Homologous gene family
HOM04D000744
(371 genes in 55 species)
specific family
Orthologous gene family
ORTHO04D001200
(223 genes in 51 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
idTp57577_TGAC_v2_gene5445.v2
tidTp57577_TGAC_v2_mRNA5635.v2
pidTp57577_TGAC_v2_mRNA5635
pacid35972059

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010048
IEA
PLAZA Integrative Orthologyvernalization response AT5G57380
GO:0070417
IEA
PLAZA Integrative Orthologycellular response to cold AT5G57380
GO:0010228
IEA
PLAZA Integrative Orthologyvegetative to reproductive phase transition of meristem AT4G30200
GO:0051571
IEA
PLAZA Integrative Orthologypositive regulation of histone H3-K4 methylation AT5G57380
GO:0048587
IEA
PLAZA Integrative Orthologyregulation of short-day photoperiodism, flowering AT4G30200
GO:0001666
IEA
PLAZA Integrative Orthologyresponse to hypoxia AT5G57380
GO:0032922
IEA
PLAZA Integrative Orthologycircadian regulation of gene expression AT4G30200
GO:0009409
IEA
PLAZA Integrative Orthologyresponse to cold AT4G30200
GO:0061087
IEA
PLAZA Integrative Orthologypositive regulation of histone H3-K27 methylation AT5G57380
GO:1900111
IEA
PLAZA Integrative Orthologypositive regulation of histone H3-K9 dimethylation AT4G30200
GO:0045814
IEA
PLAZA Integrative Orthologynegative regulation of gene expression, epigenetic AT5G57380

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0035064
IEA
PLAZA Integrative Orthologymethylated histone binding AT4G30200
GO:0042802
IEA
PLAZA Integrative Orthologyidentical protein binding AT4G30200

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031519
IEA
PLAZA Integrative OrthologyPcG protein complex AT4G30200
GO:0009506
IEA
PLAZA Integrative Orthologyplasmodesma AT4G30200
GO:0005634
IEA
PLAZA Integrative Orthologynucleus AT5G57380
GO:0005677
IEA
PLAZA Integrative Orthologychromatin silencing complex AT4G30200
GO:0016607
IEA
PLAZA Integrative Orthologynuclear speck AT5G57380

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR003961Fibronectin type III
IPR013783Immunoglobulin-like fold
IPR032881Oberon, PHD finger domain

Mapman id Description
12.3.3.1.2.2.Chromatin organisation.histone modifications.histone lysine methylation.PRC2 histone methylation complex.associated protein factors.PRC2-VRN-interacting PHD protein (VIN3|VRN5)