Dicots PLAZA 4.5 gene overview : TPR.G4145

Gene: TPR.G4145 (Trifolium pratense)

Overview

Gene Identifier: TPR.G4145
Transcript Identifier: TPR.T4276
Gene Type: Coding gene
Location: Tp57577_TGAC_v2_LG6 : 5671261-5673177 : negative

Family Information

Homologous gene family: HOM04D000061
(2190 genes in 49 species)
specific family
Orthologous gene family: ORTHO04D000094
(1013 genes in 47 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
id	Tp57577_TGAC_v2_gene4145.v2
tid	Tp57577_TGAC_v2_mRNA4276
tid	Tp57577_TGAC_v2_mRNA4276.v2
pacid	35975497

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006355	IEA	InterPro	regulation of transcription, DNA-templated

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0008270	IEA	InterPro	zinc ion binding

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR031052	FHY3/FAR1 family
IPR004330	FAR1 DNA binding domain
IPR007527	Zinc finger, SWIM-type
IPR018289	MULE transposase domain
IPR006564	Zinc finger, PMZ-type

Mapman id	Description
15.5.46	.RNA biosynthesis.transcriptional regulation.transcription factor (FAR1)