Dicots PLAZA 4.5 gene overview : TPR.G38820

Gene: TPR.G38820 (Trifolium pratense)

Overview

Gene Identifier: TPR.G38820
Transcript Identifier: TPR.T40132
Gene Type: Coding gene
Location: Tp57577_TGAC_v2_LG4 : 25821177-25829171 : negative

Family Information

Homologous gene family: HOM04D000278
(779 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D000279
(588 genes in 55 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
id	Tp57577_TGAC_v2_gene38820.v2
tid	Tp57577_TGAC_v2_mRNA40132.v2
pid	Tp57577_TGAC_v2_mRNA40132
pacid	35966362

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016866	IEA	InterPro	intramolecular transferase activity

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR018333	Squalene cyclase
IPR032697	Squalene cyclase, N-terminal
IPR032696	Squalene cyclase, C-terminal
IPR002365	Terpene synthase, conserved site
IPR008930	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid

Mapman id	Description
9.1.4.3	.Secondary metabolism.terpenoids.terpene biosynthesis.triterpenoid synthase