Dicots PLAZA 4.5 gene overview : TPR.G12089

Gene: TPR.G12089 (Trifolium pratense)

Overview

Gene Identifier: TPR.G12089
Transcript Identifier: TPR.T12485
Gene Type: Coding gene
Location: Tp57577_TGAC_v2_LG1 : 22736751-22737461 : negative

Family Information

Homologous gene family: HOM04D093822
(orphan gene)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
id	Tp57577_TGAC_v2_gene12089.v2
tid	Tp57577_TGAC_v2_mRNA12485.v2
pid	Tp57577_TGAC_v2_mRNA12485
pacid	35980897

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

No GO associations found for this gene.

No InterPro domains detected for this gene.

Mapman id	Description
35.2	not assigned.not annotated