Dicots PLAZA 4.5 gene overview : TPR.G12088

Gene: TPR.G12088 (Trifolium pratense)

Overview

Gene Identifier: TPR.G12088
Transcript Identifier: TPR.T12484
Gene Type: Coding gene
Location: Tp57577_TGAC_v2_LG1 : 22000284-22003277 : positive

Family Information

Homologous gene family: HOM04D000049
(2385 genes in 53 species)
specific family
Orthologous gene family: ORTHO04D009782
(48 genes in 45 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
id	Tp57577_TGAC_v2_gene12088.v2
tid	Tp57577_TGAC_v2_mRNA12484
tid	Tp57577_TGAC_v2_mRNA12484.v2
pacid	35978449

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0045492	IEA	PLAZA Integrative Orthology	xylan biosynthetic process	AT1G73140

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:1990538	IEA	PLAZA Integrative Orthology	xylan O-acetyltransferase activity	AT1G73140

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005794	IEA	PLAZA Integrative Orthology	Golgi apparatus	AT1G73140

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR029962	Trichome birefringence-like family
IPR025846	PMR5 N-terminal domain
IPR026057	PC-Esterase

Mapman id	Description
21.2.2.2.2	.Cell wall organisation.hemicellulose.xylan.modification and degradation.xylan O-acetyltransferase (XOAT)