Dicots PLAZA 4.5 gene overview : TPR.G12030

Gene: TPR.G12030 (Trifolium pratense)

Overview

Gene Identifier: TPR.G12030
Transcript Identifier: TPR.T12424
Gene Type: Coding gene
Location: Tp57577_TGAC_v2_LG1 : 22692875-22701037 : negative

Family Information

Homologous gene family: HOM04D000206
(982 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D008540
(61 genes in 54 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
id	Tp57577_TGAC_v2_gene12030.v2
tid	Tp57577_TGAC_v2_mRNA12424
tid	Tp57577_TGAC_v2_mRNA12424.v2
pacid	35980008

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006468	IEA	InterPro	protein phosphorylation
GO:0015996	IEA	PLAZA Integrative Orthology	chlorophyll catabolic process	AT4G31390
GO:0010114	IEA	PLAZA Integrative Orthology	response to red light	AT4G31390
GO:1902171	IEA	PLAZA Integrative Orthology	regulation of tocopherol cyclase activity	AT4G31390
GO:0031540	IEA	PLAZA Integrative Orthology	regulation of anthocyanin biosynthetic process	AT4G31390
GO:0010027	IEA	PLAZA Integrative Orthology	thylakoid membrane organization	AT4G31390
GO:0010109	IEA	PLAZA Integrative Orthology	regulation of photosynthesis	AT4G31390
GO:0009414	IEA	PLAZA Integrative Orthology	response to water deprivation	AT4G31390
GO:0009767	IEA	PLAZA Integrative Orthology	photosynthetic electron transport chain	AT4G31390
GO:0006995	IEA	PLAZA Integrative Orthology	cellular response to nitrogen starvation	AT4G31390
GO:0009637	IEA	PLAZA Integrative Orthology	response to blue light	AT4G31390
GO:0080177	IEA	PLAZA Integrative Orthology	plastoglobule organization	AT4G31390
GO:1902326	IEA	PLAZA Integrative Orthology	positive regulation of chlorophyll biosynthetic process	AT4G31390
GO:1901562	IEA	PLAZA Integrative Orthology	response to paraquat	AT4G31390
GO:1904143	IEA	PLAZA Integrative Orthology	positive regulation of carotenoid biosynthetic process	AT4G31390
GO:0080183	IEA	PLAZA Integrative Orthology	response to photooxidative stress	AT4G31390

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0004672	IEA	InterPro	protein kinase activity
GO:0005524	IEA	InterPro	ATP binding

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0010287	IEA	PLAZA Integrative Orthology	plastoglobule	AT4G31390
GO:0009507	IEA	PLAZA Integrative Orthology	chloroplast	AT4G31390

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR004147	UbiB domain
IPR000719	Protein kinase domain
IPR011009	Protein kinase-like domain

Mapman id	Description
18.4.7.4	.Protein modification.phosphorylation.atypical protein kinase families.protein kinase (ABC1)