Dicots PLAZA 4.5 gene overview : TPR.G12025

Gene: TPR.G12025 (Trifolium pratense)

Overview

Gene Identifier: TPR.G12025
Transcript Identifier: TPR.T12419
Gene Type: Coding gene
Location: Tp57577_TGAC_v2_LG1 : 22740008-22743177 : negative

Family Information

Homologous gene family: HOM04D000190
(1049 genes in 54 species)
specific family
Orthologous gene family: ORTHO04D001811
(171 genes in 52 species)
specific family

Duplication type: Block duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
id	Tp57577_TGAC_v2_gene12025.v2
tid	Tp57577_TGAC_v2_mRNA12419.v2
tid	Tp57577_TGAC_v2_mRNA12419
pacid	35980241

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0008375	IEA	InterPro	acetylglucosaminyltransferase activity

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016020	IEA	InterPro	membrane

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR003406	Glycosyl transferase, family 14

Mapman id	Description
35.1	not assigned.annotated