Dicots PLAZA 4.5 gene overview : TPR.G12022

Gene: TPR.G12022 (Trifolium pratense)

Overview

Gene Identifier: TPR.G12022
Transcript Identifier: TPR.T12416
Gene Type: Coding gene
Location: Tp57577_TGAC_v2_LG1 : 22724779-22725591 : negative

Family Information

Homologous gene family: HOM04D000500
(513 genes in 53 species)
specific family
Orthologous gene family: ORTHO04D000556
(379 genes in 52 species)
specific family

Duplication type: Tandem duplicate and Block duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
id	Tp57577_TGAC_v2_gene12022.v2
tid	Tp57577_TGAC_v2_mRNA12416.v2
pid	Tp57577_TGAC_v2_mRNA12416
pacid	35980756

Toolbox

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...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0048354	IEA	PLAZA Tree-based Orthology	mucilage biosynthetic process involved in seed coat development	AT3G46550
GO:0048367	IEA	PLAZA Tree-based Orthology	shoot system development	AT5G55730
GO:0009825	IEA	PLAZA Tree-based Orthology	multidimensional cell growth	AT3G46550
GO:0009738	IEA	PLAZA Tree-based Orthology	abscisic acid-activated signaling pathway	AT3G46550
GO:0048364	IEA	PLAZA Tree-based Orthology	root development	AT5G55730
GO:0010192	IEA	PLAZA Tree-based Orthology	mucilage biosynthetic process	AT3G46550
GO:0009651	IEA	PLAZA Tree-based Orthology	response to salt stress	AT3G46550

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0030247	IEA	PLAZA Tree-based Orthology	polysaccharide binding	AT3G46550

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0031225	IEA	PLAZA Integrative Orthology	anchored component of membrane	AT3G12660
GO:0048046	IEA	PLAZA Tree-based Orthology	apoplast	AT2G45470
GO:0016020	IEA	PLAZA Tree-based Orthology	membrane	AT4G12730
GO:0005618	IEA	PLAZA Tree-based Orthology	cell wall	AT5G55730
GO:0046658	IEA	PLAZA Tree-based Orthology	anchored component of plasma membrane	AT3G60900
GO:0005886	IEA	PLAZA Tree-based Orthology	plasma membrane	AT3G60900
GO:0009505	IEA	PLAZA Tree-based Orthology	plant-type cell wall	AT2G45470
GO:0005774	IEA	PLAZA Tree-based Orthology	vacuolar membrane	AT4G12730
GO:0009897	IEA	PLAZA Tree-based Orthology	external side of plasma membrane	AT3G46550

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR000782	FAS1 domain
IPR033254	Fasciclin-like arabinogalactan protein

Mapman id	Description
35.1	not assigned.annotated