Dicots PLAZA 4.5 gene overview : TPR.G12018

Gene: TPR.G12018 (Trifolium pratense)

Overview

Gene Identifier: TPR.G12018
Transcript Identifier: TPR.T12412
Gene Type: Coding gene
Location: Tp57577_TGAC_v2_LG1 : 22651556-22654433 : positive

Family Information

Homologous gene family: HOM04D003630
(92 genes in 54 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
id	Tp57577_TGAC_v2_gene12018.v2
tid	Tp57577_TGAC_v2_mRNA12412
tid	Tp57577_TGAC_v2_mRNA12412.v2
pacid	35980701

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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...a custom phylogenetic tree using this gene as seed.

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Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006355	IEA	PLAZA Integrative Orthology	regulation of transcription, DNA-templated	AT2G24500
GO:0042273	IEA	PLAZA Integrative Orthology	ribosomal large subunit biogenesis	AT2G24500

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0005515	IEA	PLAZA Integrative Orthology	protein binding	AT2G24500

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR013087	Zinc finger C2H2-type

Mapman id	Description
17.1.2.2.3.2	.Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU processome.60S ribosomal subunit cytoplasmic maturation.maturation factor (REIL)