Dicots PLAZA 4.5 gene overview : TPR.G11994

Gene: TPR.G11994 (Trifolium pratense)

Overview

Gene Identifier: TPR.G11994
Transcript Identifier: TPR.T12387
Gene Type: Coding gene
Location: Tp57577_TGAC_v2_LG1 : 22622288-22624314 : positive

Family Information

Homologous gene family: HOM04D000260
(817 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D010718
(28 genes in 16 species)
specific family

Duplication type: Tandem duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
id	Tp57577_TGAC_v2_gene11994.v2
tid	Tp57577_TGAC_v2_mRNA12387.v2
tid	Tp57577_TGAC_v2_mRNA12387
pacid	35978573

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006754	IEA	PLAZA Homology (enrichment)	ATP biosynthetic process	HOM04D000260

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0000166	IEA	PLAZA Homology (enrichment)	nucleotide binding	HOM04D000260
GO:0016887	IEA	PLAZA Homology (enrichment)	ATPase activity	HOM04D000260

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016021	IEA	PLAZA Homology (enrichment)	integral component of membrane	HOM04D000260

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR004014	Cation-transporting P-type ATPase, N-terminal
IPR023298	P-type ATPase, transmembrane domain

Mapman id	Description
35.1	not assigned.annotated