Dicots PLAZA 4.5 gene overview : TPR.G11986

Gene: TPR.G11986 (Trifolium pratense)

Overview

Gene Identifier: TPR.G11986
Transcript Identifier: TPR.T12378
Gene Type: Coding gene
Location: Tp57577_TGAC_v2_LG1 : 21976780-21977723 : positive

Family Information

Homologous gene family: HOM04D154907
(orphan gene)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
id	Tp57577_TGAC_v2_gene11986.v2
tid	Tp57577_TGAC_v2_mRNA12378.v2
tid	Tp57577_TGAC_v2_mRNA12378
pacid	35980992

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

No GO associations found for this gene.

No InterPro domains detected for this gene.

Mapman id	Description
35.2	not assigned.not annotated