Dicots PLAZA 4.5 gene overview : TPR.G10278

Gene: TPR.G10278 (Trifolium pratense)

Overview

Gene Identifier: TPR.G10278
Transcript Identifier: TPR.T10620
Gene Type: Coding gene
Location: Tp57577_TGAC_v2_LG1 : 3384137-3385520 : positive

Family Information

Homologous gene family: HOM04D000094
(1758 genes in 54 species)
specific family
Orthologous gene family: ORTHO04D000452
(430 genes in 53 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
id	Tp57577_TGAC_v2_gene10278.v2
tid	Tp57577_TGAC_v2_mRNA10620.v2
pid	Tp57577_TGAC_v2_mRNA10620
pacid	35980383

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0009055	IEA	InterPro	electron carrier activity

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR008972	Cupredoxin
IPR003245	Phytocyanin domain

Mapman id	Description
35.1	not assigned.annotated