Dicots PLAZA 4.5 gene overview : TPR.G10271

Gene: TPR.G10271 (Trifolium pratense)

Overview

Gene Identifier: TPR.G10271
Transcript Identifier: TPR.T10613
Gene Type: Coding gene
Location: Tp57577_TGAC_v2_LG1 : 3396584-3397838 : positive

Family Information

Homologous gene family: HOM04D000002
(11806 genes in 51 species)
specific family
Orthologous gene family: ORTHO04D000002
(4642 genes in 36 species)
specific family

Duplication type: Tandem duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
id	Tp57577_TGAC_v2_gene10271.v2
tid	Tp57577_TGAC_v2_mRNA10613.v2
tid	Tp57577_TGAC_v2_mRNA10613
pacid	35981399

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

No GO associations found for this gene.

InterPro	Description
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase

Mapman id	Description
35.1	not assigned.annotated