Dicots PLAZA 4.5 gene overview : TPR.G10268

Gene: TPR.G10268 (Trifolium pratense)

Overview

Gene Identifier: TPR.G10268
Transcript Identifier: TPR.T10610
Gene Type: Coding gene
Location: Tp57577_TGAC_v2_LG1 : 3395151-3396302 : positive

Family Information

Homologous gene family: HOM04D000002
(11806 genes in 51 species)
specific family

Duplication type: Tandem duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
id	Tp57577_TGAC_v2_gene10268.v2
tid	Tp57577_TGAC_v2_mRNA10610.v2
tid	Tp57577_TGAC_v2_mRNA10610
pacid	35979990

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0015074	IEA	InterPro	DNA integration

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003676	IEA	InterPro	nucleic acid binding

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR012337	Ribonuclease H-like domain
IPR001584	Integrase, catalytic core
IPR025724	GAG-pre-integrase domain

Mapman id	Description
35.1	not assigned.annotated