Gene: Solyc06g048410.2 (Solanum lycopersicum)

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Gene Identifier
Solyc06g048410.2
Transcript Identifier
Solyc06g048410.2.1
Gene Type
Coding gene
Location
SL2.50ch06 : 31007952-31010131 : positive

Family Information

Homologous gene family
HOM04D002034
(156 genes in 53 species)
specific family
Orthologous gene family
ORTHO04D002431
(143 genes in 53 species)
specific family
Duplication type
Tandem duplicate

Descriptions

Description
Superoxide dismutase (AHRD V1 **** Q7YK44_SOLLC); contains Interpro domain(s) IPR019833 Manganese/iron superoxide dismutase, binding site IPR001189 Manganese/iron superoxide dismutase

Identifiers

Type Value
idSolyc06g048410.2.ITAG2.4
pacid36128662
tidSolyc06g048410.2.1.ITAG2.4
tidSolyc06g048410.2.1

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006801
IEA
InterProsuperoxide metabolic process
GO:0055114
IEA
InterProoxidation-reduction process
GO:0019430
IEA
PLAZA Integrative Orthologyremoval of superoxide radicals AT4G25100
GO:0006979
IEA
PLAZA Integrative Orthologyresponse to oxidative stress AT4G25100
GO:0007623
IEA
PLAZA Integrative Orthologycircadian rhythm AT4G25100
GO:0009642
IEA
PLAZA Integrative Orthologyresponse to light intensity AT4G25100
GO:0046686
IEA
PLAZA Integrative Orthologyresponse to cadmium ion AT4G25100
GO:0046688
IEA
PLAZA Integrative Orthologyresponse to copper ion AT4G25100
GO:0010193
IEA
PLAZA Integrative Orthologyresponse to ozone AT4G25100

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004784
IDA
Gene Ontologysuperoxide dismutase activity1
GO:0004784
IEA
InterProsuperoxide dismutase activity
GO:0046872
IEA
InterPrometal ion binding
GO:0005507
IEA
PLAZA Integrative Orthologycopper ion binding AT4G25100
GO:0005515
IEA
PLAZA Integrative Orthologyprotein binding AT4G25100
GO:0019904
IEA
PLAZA Integrative Orthologyprotein domain specific binding AT4G25100

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
IEA
PLAZA Integrative Orthologymitochondrion AT4G25100
GO:0005737
IEA
PLAZA Integrative Orthologycytoplasm AT4G25100
GO:0009507
IEA
PLAZA Integrative Orthologychloroplast AT4G25100
GO:0009579
IEA
PLAZA Integrative Orthologythylakoid AT4G25100
GO:0005886
IEA
PLAZA Integrative Orthologyplasma membrane AT4G25100
GO:0009941
IEA
PLAZA Integrative Orthologychloroplast envelope AT4G25100
GO:0009570
IEA
PLAZA Integrative Orthologychloroplast stroma AT4G25100

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR019832Manganese/iron superoxide dismutase, C-terminal
IPR019831Manganese/iron superoxide dismutase, N-terminal
IPR019833Manganese/iron superoxide dismutase, binding site
IPR001189Manganese/iron superoxide dismutase

Mapman id Description
10.2.2.1.Redox homeostasis.enzymatic reactive oxygen species scavengers.superoxide dismutase activities.iron superoxide dismutase
15.6.1.2.2.4.RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essential co-factor components.component PAP4/FSD3
15.6.1.2.2.9.RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essential co-factor components.component PAP9/FSD2