Dicots PLAZA 4.5 gene overview : Solyc02g070890.2

Gene: Solyc02g070890.2 (Solanum lycopersicum)

Overview

Gene Identifier: Solyc02g070890.2
Transcript Identifier: Solyc02g070890.2.1
Gene Type: Coding gene
Location: SL2.50ch02 : 40488910-40492869 : positive

Family Information

Homologous gene family: HOM04D000021
(3545 genes in 53 species)
specific family
Orthologous gene family: ORTHO04D000007
(3197 genes in 53 species)
specific family

Duplication type: Tandem duplicate

Descriptions

Description: Receptor like kinase, RLK

Identifiers

Type	Value
id	Solyc02g070890.2.ITAG2.4
pacid	36156785
tid	Solyc02g070890.2.1.ITAG2.4
tid	Solyc02g070890.2.1

Toolbox

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...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006468	IEA	InterPro	protein phosphorylation
GO:0006898	IEA	PLAZA Integrative Orthology	receptor-mediated endocytosis	AT5G46330
GO:0042742	IEA	PLAZA Integrative Orthology	defense response to bacterium	AT5G46330
GO:0010359	IEA	PLAZA Integrative Orthology	regulation of anion channel activity	AT5G46330
GO:0016045	IEA	PLAZA Integrative Orthology	detection of bacterium	AT5G46330
GO:0052544	IEA	PLAZA Integrative Orthology	defense response by callose deposition in cell wall	AT5G46330

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0004672	IEA	InterPro	protein kinase activity
GO:0005524	IEA	InterPro	ATP binding
GO:0005515	IEA	InterPro	protein binding

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005886	TAS	Gene Ontology	plasma membrane	1
GO:0016020	IEA	PLAZA Integrative Orthology	membrane	AT5G46330
GO:0005768	IEA	PLAZA Integrative Orthology	endosome	AT5G46330

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR032675	Leucine-rich repeat domain, L domain-like
IPR013210	Leucine-rich repeat-containing N-terminal, plant-type
IPR000719	Protein kinase domain
IPR001611	Leucine-rich repeat
IPR008271	Serine/threonine-protein kinase, active site
IPR011009	Protein kinase-like domain

Mapman id	Description
18.4.1.12	.Protein modification.phosphorylation.TKL protein kinase superfamily.protein kinase (LRR-XII)
26.8.1.1.1	.External stimuli response.pathogen.pattern-triggered immunity (PTI) network.bacterial elicitor response.flagellin receptor protein kinase (FLS2)