Dicots PLAZA 4.5 gene overview : RCO.g.30178.000026

Gene: RCO.g.30178.000026 (Ricinus communis)

Overview

Gene Identifier: RCO.g.30178.000026
Transcript Identifier: RCO.t.30178.000864
Gene Type: Coding gene
Location: 30178 : 185746-187745 : positive

Family Information

Homologous gene family: HOM04D000061
(2190 genes in 49 species)
specific family

Duplication type: Tandem duplicate

Descriptions

Description: conserved hypothetical protein

Identifiers

Type	Value
id	30178.t000026.TIGRR0.1
pacid	16822838
tid	30178.m000864.TIGRR0.1
tid	30178.m000864

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006355	IEA	InterPro	regulation of transcription, DNA-templated

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0008270	IEA	PLAZA Homology (enrichment)	zinc ion binding	HOM04D000061

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR031052	FHY3/FAR1 family
IPR004330	FAR1 DNA binding domain

Mapman id	Description
15.5.46	.RNA biosynthesis.transcriptional regulation.transcription factor (FAR1)