Dicots PLAZA 4.5 gene overview : Pp3s92_110

Gene: Pp3s92_110 (Physcomitrium patens)

Overview

Gene Identifier: Pp3s92_110
Transcript Identifier: Pp3s92_110V3.1
Gene Type: Coding gene
Location: scaffold_92 : 38383-43857 : positive

Family Information

Homologous gene family: HOM04D107896
(orphan gene)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
name	Pp3s92_110V3.1
pacid	32963389
tid	PAC:32963389

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0055114	IEA	InterPro	oxidation-reduction process

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016491	IEA	InterPro	oxidoreductase activity
GO:0003824	IEA	InterPro	catalytic activity
GO:0008080	IEA	InterPro	N-acetyltransferase activity
GO:0005488	IEA	InterPro	binding

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR023753	FAD/NAD(P)-binding domain
IPR011146	HIT-like domain
IPR014824	Scaffold protein Nfu/NifU, N-terminal
IPR016181	Acyl-CoA N-acyltransferase
IPR016024	Armadillo-type fold
IPR004155	PBS lyase HEAT-like repeat
IPR000182	GNAT domain
IPR025989	Virulence factor domain
IPR002937	Amine oxidase

Mapman id	Description
35.2	not assigned.not annotated