Dicots PLAZA 4.5 gene overview : Pp3s92_100

Gene: Pp3s92_100 (Physcomitrium patens)

Overview

Gene Identifier: Pp3s92_100
Transcript Identifier: Pp3s92_100V3.1
Gene Type: Coding gene
Location: scaffold_92 : 23095-25158 : negative

Family Information

Homologous gene family: HOM04D027254
(2 genes in 2 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
name	Pp3s92_100V3.1
pacid	32963382
tid	PAC:32963382

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0045454	IEA	InterPro	cell redox homeostasis

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR012336	Thioredoxin-like fold
IPR013766	Thioredoxin domain
IPR032693	YtkA-like domain
IPR019108	Cytochrome c oxidase caa3-type, assembly factor CtaG-related
IPR003782	Copper chaperone SCO1/SenC
IPR013783	Immunoglobulin-like fold

Mapman id	Description
35.2	not assigned.not annotated