Dicots PLAZA 4.5 gene overview : Pp3s42_50

Gene: Pp3s42_50 (Physcomitrium patens)

Overview

Gene Identifier: Pp3s42_50
Transcript Identifier: Pp3s42_50V3.1
Gene Type: Coding gene
Location: scaffold_42 : 19748-22512 : positive

Family Information

Homologous gene family: HOM04D035396
(2 genes in 1 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
name	Pp3s42_50V3.1
pacid	32945172
tid	PAC:32945172

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006097	IEA	InterPro	glyoxylate cycle

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0004474	IEA	InterPro	malate synthase activity
GO:0003824	IEA	InterPro	catalytic activity

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR006253	Malate synthase G
IPR011076	Malate synthase-like
IPR001465	Malate synthase

Mapman id	Description
35.2	not assigned.not annotated