Dicots PLAZA 4.5 gene overview : Pp3s397_40

Gene: Pp3s397_40 (Physcomitrium patens)

Overview

Gene Identifier: Pp3s397_40
Transcript Identifier: Pp3s397_40V3.2
Gene Type: Coding gene
Location: scaffold_397 : 5255-6904 : negative

Family Information

Homologous gene family: HOM04D000643
(417 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D000990
(255 genes in 55 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
alias	Pp1s33_380V6
alias	Phpat.1Z070300
name	Pp3s397_40V3.2
pacid	32963396
tid	PAC:32963396

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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...a custom phylogenetic tree using this gene as seed.

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Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0015696	IEA	InterPro	ammonium transport
GO:0072488	IEA	InterPro	ammonium transmembrane transport
GO:0010311	IEA	PLAZA Integrative Orthology	lateral root formation	AT3G24300
GO:0015843	IEA	PLAZA Integrative Orthology	methylammonium transport	AT1G64780
GO:0009624	IEA	PLAZA Integrative Orthology	response to nematode	AT1G64780
GO:0080167	IEA	PLAZA Integrative Orthology	response to karrikin	AT4G13510
GO:0009737	IEA	PLAZA Integrative Orthology	response to abscisic acid	AT4G13510
GO:0051258	IEA	PLAZA Integrative Orthology	protein polymerization	AT4G13510
GO:0080181	IEA	PLAZA Integrative Orthology	lateral root branching	AT3G24300

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0008519	IEA	InterPro	ammonium transmembrane transporter activity
GO:0015398	IEA	PLAZA Integrative Orthology	high-affinity secondary active ammonium transmembrane transporter activity	AT4G28700

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016020	IEA	InterPro	membrane
GO:0005886	IEA	PLAZA Integrative Orthology	plasma membrane	AT3G24300
GO:0009506	IEA	PLAZA Integrative Orthology	plasmodesma	AT4G28700
GO:0005634	IEA	PLAZA Integrative Orthology	nucleus	AT4G13510

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR001905	Ammonium transporter
IPR024041	Ammonium transporter AmtB-like domain
IPR018047	Ammonium transporter, conserved site

Mapman id	Description
24.3.4.1	.Solute transport.channels.AMT family.ammonium transporter (AMT1)