Dicots PLAZA 4.5 gene overview : Pp3s396_10

Gene: Pp3s396_10 (Physcomitrium patens)

Overview

Gene Identifier: Pp3s396_10
Transcript Identifier: Pp3s396_10V3.1
Gene Type: Coding gene
Location: scaffold_396 : 497-3547 : positive

Family Information

Homologous gene family: HOM04D033984
(2 genes in 1 species)
specific family
Orthologous gene family: ORTHO04D006159
(74 genes in 53 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
name	Pp3s396_10V3.1
pacid	32929842
tid	PAC:32929842

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

No GO associations found for this gene.

InterPro	Description
IPR008979	Galactose-binding domain-like
IPR010400	PITH domain

Mapman id	Description
35.2	not assigned.not annotated