Dicots PLAZA 4.5 gene overview : Pp3s37_130

Gene: Pp3s37_130 (Physcomitrium patens)

Overview

Gene Identifier: Pp3s37_130
Transcript Identifier: Pp3s37_130V3.2
Gene Type: Coding gene
Location: scaffold_37 : 90059-90508 : positive

Family Information

Homologous gene family: HOM04D000283
(767 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D013687
(9 genes in 7 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
name	Pp3s37_130V3.2
pacid	32980899
tid	PAC:32980899

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0030001	IEA	PLAZA Homology (enrichment)	metal ion transport	HOM04D000283
GO:0006812	IEA	PLAZA Homology (enrichment)	cation transport	HOM04D000283

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0046872	IEA	PLAZA Homology (enrichment)	metal ion binding	HOM04D000283
GO:0019829	IEA	PLAZA Homology (enrichment)	cation-transporting ATPase activity	HOM04D000283
GO:0000166	IEA	PLAZA Homology (enrichment)	nucleotide binding	HOM04D000283

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016021	IEA	PLAZA Homology (enrichment)	integral component of membrane	HOM04D000283

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

No InterPro domains detected for this gene.

Mapman id	Description
35.2	not assigned.not annotated