Dicots PLAZA 4.5 gene overview : Pp3s356_10

Gene: Pp3s356_10 (Physcomitrium patens)

Overview

Gene Identifier: Pp3s356_10
Transcript Identifier: Pp3s356_10V3.1
Gene Type: Coding gene
Location: scaffold_356 : 2-2557 : negative

Family Information

Homologous gene family: HOM04D120369
(orphan gene)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
name	Pp3s356_10V3.1
pacid	32937657
tid	PAC:32937657

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0030435	IEA	InterPro	sporulation resulting in formation of a cellular spore
GO:0008616	IEA	InterPro	queuosine biosynthetic process

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0042834	IEA	InterPro	peptidoglycan binding
GO:0016740	IEA	InterPro	transferase activity
GO:0016853	IEA	InterPro	isomerase activity

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR013486	Sporulation stage II protein D, amidase enhancer LytB
IPR003699	S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA
IPR007730	Sporulation-related domain
IPR013693	Sporulation stage II protein D, amidase enhancer LytB N-terminal

Mapman id	Description
35.2	not assigned.not annotated