Dicots PLAZA 4.5 gene overview : Pp3s34_90

Gene: Pp3s34_90 (Physcomitrium patens)

Overview

Gene Identifier: Pp3s34_90
Transcript Identifier: Pp3s34_90V3.1
Gene Type: Coding gene
Location: scaffold_34 : 14747-15941 : negative

Family Information

Homologous gene family: HOM04D184446
(orphan gene)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
name	Pp3s34_90V3.1
pacid	32948296
tid	PAC:32948296

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016787	IEA	InterPro	hydrolase activity

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR015797	NUDIX hydrolase domain-like
IPR013022	Xylose isomerase-like, TIM barrel domain
IPR000086	NUDIX hydrolase domain
IPR020084	NUDIX hydrolase, conserved site
IPR020476	NUDIX hydrolase

Mapman id	Description
35.2	not assigned.not annotated