Dicots PLAZA 4.5 gene overview : Pp3s34_650

Gene: Pp3s34_650 (Physcomitrium patens)

Overview

Gene Identifier: Pp3s34_650
Transcript Identifier: Pp3s34_650V3.1
Gene Type: Coding gene
Location: scaffold_34 : 206216-209320 : negative

Family Information

Homologous gene family: HOM04D086334
(orphan gene)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
name	Pp3s34_650V3.1
pacid	32948285
tid	PAC:32948285

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005515	IEA	InterPro	protein binding

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR032774	WG containing repeat
IPR015943	WD40/YVTN repeat-like-containing domain

Mapman id	Description
35.2	not assigned.not annotated