Dicots PLAZA 4.5 gene overview : Pp3s34_551

Gene: Pp3s34_551 (Physcomitrium patens)

Overview

Gene Identifier: Pp3s34_551
Transcript Identifier: Pp3s34_551V3.1
Gene Type: Coding gene
Location: scaffold_34 : 179244-180932 : negative

Family Information

Homologous gene family: HOM04D070684
(orphan gene)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
name	Pp3s34_551V3.1
pacid	32948270
tid	PAC:32948270

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006807	IEA	InterPro	nitrogen compound metabolic process

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016810	IEA	InterPro	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016020	IEA	InterPro	membrane
GO:0016021	IEA	InterPro	integral component of membrane

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR003010	Carbon-nitrogen hydrolase
IPR000620	EamA domain

Mapman id	Description
35.2	not assigned.not annotated