Dicots PLAZA 4.5 gene overview : Pp3s34_480

Gene: Pp3s34_480 (Physcomitrium patens)

Overview

Gene Identifier: Pp3s34_480
Transcript Identifier: Pp3s34_480V3.1
Gene Type: Coding gene
Location: scaffold_34 : 155118-157435 : negative

Family Information

Homologous gene family: HOM04D036544
(2 genes in 1 species)
specific family

Duplication type: Tandem duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
name	Pp3s34_480V3.1
pacid	32948252
tid	PAC:32948252

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016787	IEA	InterPro	hydrolase activity

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR012338	Beta-lactamase/transpeptidase-like
IPR029052	Metallo-dependent phosphatase-like
IPR004843	Calcineurin-like phosphoesterase domain, ApaH type

Mapman id	Description
35.2	not assigned.not annotated