Dicots PLAZA 4.5 gene overview : Pp3s34_40

Gene: Pp3s34_40 (Physcomitrium patens)

Overview

Gene Identifier: Pp3s34_40
Transcript Identifier: Pp3s34_40V3.1
Gene Type: Coding gene
Location: scaffold_34 : 5690-6976 : positive

Family Information

Homologous gene family: HOM04D036695
(2 genes in 1 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
name	Pp3s34_40V3.1
pacid	32948268
tid	PAC:32948268

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006313	IEA	InterPro	transposition, DNA-mediated

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003677	IEA	InterPro	DNA binding
GO:0004803	IEA	InterPro	transposase activity

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR002525	Transposase, IS111A/IS1328/IS1533, N-terminal
IPR003346	Transposase, IS116/IS110/IS902

Mapman id	Description
35.2	not assigned.not annotated