Dicots PLAZA 4.5 gene overview : Pp3s34_388

Gene: Pp3s34_388 (Physcomitrium patens)

Overview

Gene Identifier: Pp3s34_388
Transcript Identifier: Pp3s34_388V3.1
Gene Type: Coding gene
Location: scaffold_34 : 96021-96356 : negative

Family Information

Homologous gene family: HOM04D169401
(orphan gene)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
name	Pp3s34_388V3.1
pacid	32948294
tid	PAC:32948294

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

No GO associations found for this gene.

InterPro	Description
IPR029068	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
IPR004360	Glyoxalase/fosfomycin resistance/dioxygenase domain

Mapman id	Description
35.2	not assigned.not annotated