Dicots PLAZA 4.5 gene overview : Pp3s34_320

Gene: Pp3s34_320 (Physcomitrium patens)

Overview

Gene Identifier: Pp3s34_320
Transcript Identifier: Pp3s34_320V3.1
Gene Type: Coding gene
Location: scaffold_34 : 83571-84434 : positive

Family Information

Homologous gene family: HOM04D080085
(orphan gene)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
name	Pp3s34_320V3.1
pacid	32948258
tid	PAC:32948258

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0016787	IEA	InterPro	hydrolase activity
GO:0046872	IEA	InterPro	metal ion binding

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR020821	Extracellular Endonuclease, subunit A
IPR001604	DNA/RNA non-specific endonuclease

Mapman id	Description
35.2	not assigned.not annotated