Dicots PLAZA 4.5 gene overview : Pp3s34_240

Gene: Pp3s34_240 (Physcomitrium patens)

Overview

Gene Identifier: Pp3s34_240
Transcript Identifier: Pp3s34_240V3.1
Gene Type: Coding gene
Location: scaffold_34 : 54886-55578 : positive

Family Information

Homologous gene family: HOM04D160928
(orphan gene)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
name	Pp3s34_240V3.1
pacid	32948249
tid	PAC:32948249

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006355	IEA	InterPro	regulation of transcription, DNA-templated

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003677	IEA	InterPro	DNA binding

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR011991	Winged helix-turn-helix DNA-binding domain
IPR018490	Cyclic nucleotide-binding-like
IPR012318	Crp-type HTH domain
IPR000595	Cyclic nucleotide-binding domain
IPR014710	RmlC-like jelly roll fold

Mapman id	Description
35.2	not assigned.not annotated