Dicots PLAZA 4.5 gene overview : Pp3s34_220

Gene: Pp3s34_220 (Physcomitrium patens)

Overview

Gene Identifier: Pp3s34_220
Transcript Identifier: Pp3s34_220V3.1
Gene Type: Coding gene
Location: scaffold_34 : 50751-51557 : positive

Family Information

Homologous gene family: HOM04D033577
(2 genes in 1 species)
specific family

Duplication type: Tandem duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
name	Pp3s34_220V3.1
pacid	32948302
tid	PAC:32948302

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006355	IEA	InterPro	regulation of transcription, DNA-templated

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003700	IEA	InterPro	transcription factor activity, sequence-specific DNA binding
GO:0043565	IEA	InterPro	sequence-specific DNA binding

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR018060	DNA binding HTH domain, AraC-type

Mapman id	Description
35.2	not assigned.not annotated