Dicots PLAZA 4.5 gene overview : Pp3s34_20

Gene: Pp3s34_20 (Physcomitrium patens)

Overview

Gene Identifier: Pp3s34_20
Transcript Identifier: Pp3s34_20V3.1
Gene Type: Coding gene
Location: scaffold_34 : 959-4912 : negative

Family Information

Homologous gene family: HOM04D000283
(767 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D002793
(131 genes in 54 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
name	Pp3s34_20V3.1
pacid	32948324
tid	PAC:32948324

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0030001	IEA	InterPro	metal ion transport
GO:0055114	IEA	InterPro	oxidation-reduction process
GO:0006812	IEA	InterPro	cation transport

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0046872	IEA	InterPro	metal ion binding
GO:0000166	IEA	InterPro	nucleotide binding
GO:0016491	IEA	InterPro	oxidoreductase activity
GO:0020037	IEA	InterPro	heme binding
GO:0051536	IEA	InterPro	iron-sulfur cluster binding
GO:0005507	IEA	InterPro	copper ion binding
GO:0019829	IEA	InterPro	cation-transporting ATPase activity

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016021	IEA	InterPro	integral component of membrane

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR027256	P-type ATPase, subfamily IB
IPR006122	Heavy metal-associated domain, copper ion-binding
IPR001757	P-type ATPase
IPR006121	Heavy metal-associated domain, HMA
IPR023214	HAD-like domain
IPR008250	P-type ATPase, A domain
IPR023298	P-type ATPase, transmembrane domain
IPR017969	Heavy-metal-associated, conserved site
IPR018303	P-type ATPase, phosphorylation site
IPR006067	Nitrite/sulphite reductase 4Fe-4S domain
IPR013783	Immunoglobulin-like fold
IPR023299	P-type ATPase, cytoplasmic domain N

Mapman id	Description
24.1.2.1.1	.Solute transport.primary active transport.P-type ATPase superfamily.P1 family.P1B-type heavy metal cation-transporting ATPase (HMA)