Dicots PLAZA 4.5 gene overview : Pp3s34_170

Gene: Pp3s34_170 (Physcomitrium patens)

Overview

Gene Identifier: Pp3s34_170
Transcript Identifier: Pp3s34_170V3.1
Gene Type: Coding gene
Location: scaffold_34 : 31589-37403 : negative

Family Information

Homologous gene family: HOM04D000065
(2144 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D029715
(2 genes in 1 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
name	Pp3s34_170V3.1
pacid	32948266
tid	PAC:32948266

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0055085	IEA	PLAZA Homology (enrichment)	transmembrane transport	HOM04D000065
GO:0006810	IEA	InterPro	transport
GO:0019700	IEA	InterPro	organic phosphonate catabolic process

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0042626	IEA	PLAZA Homology (enrichment)	ATPase activity, coupled to transmembrane movement of substances	HOM04D000065
GO:0003824	IEA	InterPro	catalytic activity
GO:0050194	IEA	InterPro	phosphonoacetaldehyde hydrolase activity
GO:0047304	IEA	InterPro	2-aminoethylphosphonate-pyruvate transaminase activity
GO:0005215	IEA	InterPro	transporter activity
GO:0005524	IEA	InterPro	ATP binding
GO:0016820	IEA	InterPro	hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
GO:0016887	IEA	InterPro	ATPase activity

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016021	IEA	PLAZA Homology (enrichment)	integral component of membrane	HOM04D000065
GO:0016020	IEA	InterPro	membrane
GO:0043190	IEA	InterPro	ATP-binding cassette (ABC) transporter complex

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR017664	2-aminoethylphosphonate ABC transport system, permease protein, putative
IPR017663	ABC transport system, 1-aminoethylphosphonate-binding protein, putative
IPR012703	2-aminoethylphosphonate--pyruvate transaminase
IPR006323	Phosphonoacetaldehyde hydrolase
IPR000515	ABC transporter type 1, transmembrane domain MetI-like
IPR008995	Molybdate/tungstate binding, C-terminal
IPR015424	Pyridoxal phosphate-dependent transferase
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR023214	HAD-like domain
IPR003593	AAA+ ATPase domain
IPR003439	ABC transporter-like
IPR017871	ABC transporter, conserved site
IPR000192	Aminotransferase class V domain
IPR013611	Transport-associated OB, type 2
IPR015421	Pyridoxal phosphate-dependent transferase, major region, subdomain 1
IPR023198	Phosphoglycolate phosphatase, domain 2
IPR015422	Pyridoxal phosphate-dependent transferase, subdomain 2

Mapman id	Description
50.2.6	.Enzyme classification.EC_2 transferases.EC_2.6 transferase transferring nitrogenous group