Dicots PLAZA 4.5 gene overview : Pp3s32_680

Gene: Pp3s32_680 (Physcomitrium patens)

Overview

Gene Identifier: Pp3s32_680
Transcript Identifier: Pp3s32_680V3.1
Gene Type: Coding gene
Location: scaffold_32 : 251665-253392 : positive

Family Information

Homologous gene family: HOM04D047521
(orphan gene)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
name	Pp3s32_680V3.1
pacid	32948379
tid	PAC:32948379

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016810	IEA	InterPro	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0016787	IEA	InterPro	hydrolase activity

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR011059	Metal-dependent hydrolase, composite domain
IPR032466	Metal-dependent hydrolase
IPR006680	Amidohydrolase-related
IPR026912	Adenine deaminase C-terminal domain

Mapman id	Description
35.2	not assigned.not annotated