Dicots PLAZA 4.5 gene overview : Pp3s32_500

Gene: Pp3s32_500 (Physcomitrium patens)

Overview

Gene Identifier: Pp3s32_500
Transcript Identifier: Pp3s32_500V3.1
Gene Type: Coding gene
Location: scaffold_32 : 186752-187744 : positive

Family Information

Homologous gene family: HOM04D027458
(2 genes in 2 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
name	Pp3s32_500V3.1
pacid	32948360
tid	PAC:32948360

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016831	IEA	InterPro	carboxy-lyase activity
GO:0016787	IEA	InterPro	hydrolase activity

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR032466	Metal-dependent hydrolase
IPR006680	Amidohydrolase-related
IPR032465	ACMSD/PatG/YanB

Mapman id	Description
35.2	not assigned.not annotated