Dicots PLAZA 4.5 gene overview : Pp3s32_285

Gene: Pp3s32_285 (Physcomitrium patens)

Overview

Gene Identifier: Pp3s32_285
Transcript Identifier: Pp3s32_285V3.1
Gene Type: Coding gene
Location: scaffold_32 : 106123-107670 : positive

Family Information

Homologous gene family: HOM04D000182
(1081 genes in 55 species)
specific family

Duplication type: Tandem duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
name	Pp3s32_285V3.1
pacid	32948351
tid	PAC:32948351

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0008152	IEA	InterPro	metabolic process
GO:0055114	IEA	InterPro	oxidation-reduction process

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016491	IEA	InterPro	oxidoreductase activity

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR005932	Putative 1-pyrroline-5-carboxylate dehydrogenase, Bacillales
IPR016161	Aldehyde/histidinol dehydrogenase
IPR016160	Aldehyde dehydrogenase, cysteine active site
IPR015590	Aldehyde dehydrogenase domain
IPR016162	Aldehyde dehydrogenase N-terminal domain

Mapman id	Description
50.1.2	.Enzyme classification.EC_1 oxidoreductases.EC_1.2 oxidoreductase acting on aldehyde or oxo group of donor