Dicots PLAZA 4.5 gene overview : Pp3s32_140

Gene: Pp3s32_140 (Physcomitrium patens)

Overview

Gene Identifier: Pp3s32_140
Transcript Identifier: Pp3s32_140V3.1
Gene Type: Coding gene
Location: scaffold_32 : 54662-55771 : positive

Family Information

Homologous gene family: HOM04D155259
(orphan gene)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
name	Pp3s32_140V3.1
pacid	32948404
tid	PAC:32948404

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006810	IEA	InterPro	transport

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005215	IEA	InterPro	transporter activity

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016020	IEA	InterPro	membrane

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR001851	ABC transporter, permease

Mapman id	Description
35.2	not assigned.not annotated